Array 1 103831-103191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXB010000002.1 Escherichia coli strain BfR-EC-17679 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103830 29 100.0 32 ............................. GTGAGCCATTACAGCGTGTACAGGCAGTTACG 103769 29 100.0 32 ............................. GCGATCAACAAGCTGGAACGGCAGTATTTAAA 103708 29 100.0 32 ............................. GCCCGCGCGGGCTACATGACTATCCACTGCAA 103647 29 100.0 32 ............................. ACGGGTAACAGTTCTGGTGGTGAGATAGCGGC 103586 29 100.0 32 ............................. CTTTTTTGTGTCGAACCTGTTTTTCTTAGTGC 103525 29 100.0 32 ............................. CCTGGGAAACTTCTCGTTCTGCTGCTGTCCAG 103464 29 96.6 33 ............T................ GCTGGGTAATGGGGGGGCAATAATATGTGCGGC 103402 29 100.0 32 ............................. ACGAGGCTTTTTTTATTATTGTGGTTGTAAGT 103341 29 100.0 32 ............................. ATGGCCCAGGGATTTGTTCAGTCCAGCGTGCC 103280 29 100.0 32 ............................. GGGTGATTACCGTCGGCGGCTGGCTGGATTTG 103219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTATTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCCGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129918-129280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXB010000002.1 Escherichia coli strain BfR-EC-17679 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129917 29 100.0 32 ............................. CCGCTGCGATTGTGGGCGCGAGGAGGTTTTAC 129856 29 100.0 32 ............................. GACAGGATCTGGTCGTGATTAGCGGGAAAAGA 129795 29 100.0 32 ............................. AAAACAAACCAGTATGCACTCATCTTTTCACC 129734 29 100.0 32 ............................. GGCCTACAGTGCTGCCTACGAAGAAGCGTTTG 129673 29 100.0 32 ............................. CAGCCCCCAGACCATTTATTGCAACGGGGTGT 129612 29 100.0 32 ............................. CGCAAAAACCATTTTTTTCCAGCGCGATTTAA 129551 29 100.0 32 ............................. TCGTTTGGCGACAAGCTTGATGAGATGCATAA 129490 29 100.0 32 ............................. AGACCGAATACGATTCCTATTTCCGGCGCAAA 129429 29 100.0 32 ............................. ATCACCTGATCTAATGTGCCTGCCTTCCGGTA 129368 29 100.0 32 ............................. GCAAAAAATACGATCTCGCCGGTGTTTTCAGT 129307 28 86.2 0 ............TT...........-..A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.7 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATACGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTGAAAATTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTTAGGTATGTTCAGGCCGGGCAGTTTTCCGCCCGGCCTACCTCATTCACGCATTCGACCAGCTCTGGATAGAATCCGCATTTCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGTTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //