Array 1 160-705 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLX01000112.1 Bacteroides pyogenes strain KG-30 NODE_112_length_875_cov_17.438503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 160 29 100.0 36 ............................. GTATGTCGGATGCCTGGATAATGAAAAACATCGGCA 225 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 288 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 354 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 419 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 483 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 547 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 612 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 677 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : CTGCGGACTTTTCACCCGCATGGCAGCAAAGATTGCCGCTATGACTTTCATGCAATATGTCAATTACGCTAATCATCGTCCGATTGGAAAGATAAAATATTCGCTAATTTAATTCAACCAACGGGTTCAGGTAGTAATATTCCGAAAGAATCAACGAACC # Right flank : AAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTGGTAAGCCTCCGGTAAACCACGTATTTTCTGCAATCTCTTCGACCAGTATCTTTGTGCCCAAAAAGTAAAACTTATGATGACACGAGAAGAAGTTGCAGAAATTATTATGTACTGCAAGGAACACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 809-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLX01000028.1 Bacteroides pyogenes strain KG-30 NODE_28_length_37746_cov_23.817858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 808 29 100.0 36 ............................. TTGTCCTCACCCCCGGCAGCATCAGCCGCGAGCGCT 743 29 100.0 36 ............................. ACGGCAAGACGGCATACACCCACATCGCTTACGCCG 678 29 100.0 35 ............................. TCGCCCAGACATCCGGAGGTGGTCAGCTTGCCCCA 614 29 100.0 36 ............................. GAGCCAAGGGTGCCGACGGCAAGATGGCATACACCC 549 29 100.0 36 ............................. ATCACCCAGTCGAGCGACATGGAGTTGGCAGACATG 484 29 100.0 36 ............................. AGCATTCAAGTTTATCGGCGAGGGCGGAAAGATTAA 419 29 100.0 35 ............................. ACAGAAAGAGGACGTTTTGCGAAAGAAGGTAGACG 355 29 100.0 34 ............................. AAGTATGAATTGATTTTAAAAGTGGAACAGGGGA 292 29 100.0 36 ............................. GAAGTCCGCATAATTAGGAGAGTACTCGTACTGCGT 227 29 100.0 34 ............................. TGGTAACGGCTCTTTCCCCTCTTTTATCTTCTCG 164 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 11 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : AAACCGTTTAAAATGTGGTGGTGAATAATGTACATAATTTTAGTTTATGATTGTGGCGAAAAGCGTGTAAGTAAAATGTTGAAGCTCTGTCGGAAATATTTGAATTGGATACAAAATTCTGTTTTTGAAGGTGAAATTTCAGAGGTAAAACTAAAAGAATTAACTTTGAAAGCTCAAAAAATAATGGATATGAATACTGATAGTTTGATTATTTTTTCCGGTAGAAGTGAGAAGTGGCTTGACAAGCAAATTGTTGGGAAAGAAAGAAGTAGTATAGACAATTTTTTATAATTGTGCGTCGATGTTCTTCACTTCAAGCAGATATTAGGAAAAGCCTGTCTATTATGTTCTTTGACATTCTGAAAATCAATGTATTATAATGTTGTCGATAACCAGTGATTTTCTTATCATTGAATATCGACAAGTTTTTTAAATTTAAAATGCTCTTTCTGAAAAATATTTGATTGAAAATCAATTGCTTATTATTCCTTTAAGTATGG # Right flank : TGATTCAGGTAACCCGTTGGTTGAATTAAAAATCTAAATATTTACAAATGAAAAAGTTGCACATATCACTGATTTTTAGTAATTTAATGGTAGCTAAACCGTTGAATACTATTTATCTGCATATGCGCAACTTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 315-1053 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLX01000002.1 Bacteroides pyogenes strain KG-30 NODE_2_length_235605_cov_26.794749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 315 47 100.0 30 ............................................... AGAATATCCAACCACTCATTTTCTGTTAGC 392 47 100.0 30 ............................................... TTAAACTTCTTTCCATATAACACTAATTTT 469 47 100.0 30 ............................................... GAGATTCCGAACGAATAAAAATCAGCTTAG 546 47 100.0 29 ............................................... TGGTTAGTTAAACTCCAATCGCCCATTGT 622 47 100.0 30 ............................................... GCACGTTTCGGGGAATATCTCTTGATATTC 699 47 100.0 30 ............................................... GATTTCTCTGAGAAACCAAAAAGACGGTAA 776 47 100.0 30 ............................................... TCTGTAGGCAAAAGCAGAAACAAGCTCTGC 853 47 100.0 29 ............................................... GGCTCTATCTCAATACGACTTATCTCAGT 929 47 97.9 29 .......C....................................... AGGAAGATCCTCACAAGGAAAATAGCGCT 1005 47 85.1 0 ..............................G.CCG.G....T....A | C,T [1035,1044] ========== ====== ====== ====== =============================================== ============================== ================== 10 47 98.3 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : TCTCAACCAGTGCGTCAACCATGCGCACCGGATCGTTCTCTGCAATATCCTCGTCAATTCTTTGAGGAAAAAGCACTGTTTGGTTGGGATTGTAAGGACGAAAATGTATCTTTGTCATAGTATAAAAAGTTATGCTTAAAGATACAAAATCTTTAGGTAATAACAAAGCCCCGGCTTGTGAAAGTCGGGGCTTTGTGCATAAAAAAAGAGGTGTGCATTTTGACACACCTCCTTTTTTATTGTTAATGAGTACGGTTTTTCTTATTCTAATAGTCCTATTAATCCGTTGATTATTAGTTGTCTACTCTGATTCTG # Right flank : AAAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCGGGCGTCATTTCTGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //