Array 1 417544-419625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDMU010000009.1 Listeria monocytogenes strain 2234 Contig_9_33.2361_424789bp, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 417544 36 100.0 30 .................................... TAATCGAAAACGGAAAATCGAAATTGGTCC 417610 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGGAAAACCA 417676 36 100.0 30 .................................... TCTGGGCGCTATGTATACAGAAGAAGAACA 417742 36 100.0 30 .................................... CATATTATTCTCCCTCCATTAATCCGCGCG 417808 36 100.0 30 .................................... ACCCCTCTTGAAATTGAGACGAACGGAGGG 417874 36 100.0 30 .................................... AATGAATTTATAGCATTTATCGAACCAATT 417940 36 100.0 30 .................................... CACTGCTGTAGCCGCTGTTTTAGCCGCTCC 418006 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 418072 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 418137 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 418203 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 418269 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 418335 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 418401 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 418467 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 418533 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 418598 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 418664 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 418730 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 418796 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 418862 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 418928 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 418994 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 419060 36 100.0 31 .................................... CAGGCGCGTGCGCGACGTTTCTGTCAGGCGC 419127 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 419193 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 419259 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 419325 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 419391 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 419457 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 419523 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 419587 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [419612,419618,419621] ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //