Array 1 5087-2166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYX010000035.1 Clostridium botulinum C/D strain IZSVe-TV_6289_14 NODE_35_length_34941_cov_135.586_ID_6610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5086 30 100.0 37 .............................. TTAGTAGCTTTATCTTTATCTACTGCACTAGGTTCAG 5019 30 100.0 36 .............................. CCTTGTAATGTTTTTACCTCATTCTTTAAAGATTCT 4953 30 100.0 35 .............................. CCAATTGAACTCATGAAAGAAATTATGTTAAATGG 4888 30 100.0 36 .............................. AGTAGTGGTGGTATCGATAGAATTGATTCTATTTGT 4822 30 100.0 36 .............................. GTATTAGAGTTATTGTCGTGCCTTTTACTACGTTTT 4756 30 100.0 35 .............................. AGCGTAGATACAACTTTAATTTACGCAGAATTAGA 4691 30 100.0 36 .............................. ATTTTTAGTTCTGCACAAACGAGTGGAATTATAATT 4625 30 100.0 36 .............................. TAGTGTCTAACTACTCTATTTATAGATATATTGTAC 4559 30 100.0 37 .............................. TAATTAAATTATTTAACAAATTGTCTTTTGTATTACT 4492 30 100.0 37 .............................. TTACAACAAATGTACCATCTTCAAAATCCATTTCAAC 4425 30 100.0 36 .............................. TCAAAAACAGTACTCAATCCGGATTTTTCTATAATT 4359 30 100.0 37 .............................. TTTAATCACTCCTTTCTAAACTGGTCGAATTCGACCA 4292 30 100.0 35 .............................. AGAAAAATGGACAAGTCTTTGGCAAAGTTGTTTAA 4227 30 100.0 37 .............................. TGATATATTAGCATAAGTCGTCCCGCGAATTATAACT 4160 30 100.0 34 .............................. TTGCCCTCTATGAGATAATTATTGTCTTTAACTG 4096 30 100.0 35 .............................. AATAGTACACTAAAGGCGTTACTATCTGTTGCATT 4031 30 100.0 37 .............................. TGTCATAATCGCAAAATAACACAATAACCACATCCCC 3964 30 100.0 35 .............................. TAACCAGCAGTTTCCCAATATGGCGGATCACAGAA 3899 30 100.0 34 .............................. CTATCCTCTGGTATCTTATCTATATTTAAATTAT 3835 30 100.0 35 .............................. AACTTCAAGGGGCAAATTTTTGTAAAGTGAGGTTG 3770 30 100.0 36 .............................. TTGCGTGCTTATGGTTAATAAAAGTTATTTTACAGA 3704 30 100.0 37 .............................. GAACCTGTACCATATAGTATTTTTAAATTTCTAGTTA 3637 30 100.0 35 .............................. AAGTTTTCTATAAAAGTATGTTCAGCACTTGAATT 3572 30 100.0 36 .............................. AAGGTAACTACAAAAGACCCCGTAGTCTGGTATATT 3506 30 100.0 35 .............................. TTCCATTTTGTTCTAGCATCTGCAATCGCTACATA 3441 30 100.0 35 .............................. TACAAATGCAATACAGAATAGTTATAAATATTTTT 3376 30 100.0 37 .............................. AAAGATAATTTAAAGGGGTTTAACGTAATTACTTTAA 3309 30 100.0 36 .............................. GAAGAAAACTCACAGTTTTTAATAAAATCTATAATT 3243 30 100.0 37 .............................. ACGTCTTCTAATAGTCCTTCAAATTCTATTGGCATAA 3176 30 100.0 36 .............................. ATCTTTTTGTTTTTCTTCCGATCTTTGTACTTACTG 3110 30 100.0 35 .............................. TATTCTAACTTCACATCCTTTTAAAGGTCGCCATT 3045 30 100.0 36 .............................. TGGGAAAAGTTACGCACGAAACTTCTTTAATGTCTA 2979 30 100.0 35 .............................. TTTCCAGTGAGCAATAGAAAACAGTACCTTTTCTG 2914 30 100.0 36 .............................. CTTGATTTATTGAAACCATATTGGGAAATGGCGAAC 2848 30 100.0 34 .............................. AGAAAAATAACTTCTAAACTTAATTTCAATATAT 2784 30 100.0 36 .............................. TCAATTAAAATAAGGGCATTTCGAACATCTACTATG 2718 30 96.7 34 ...............T.............. AATTTTATATACATTTTTAAAATTTTACTAAAAA 2654 30 100.0 36 .............................. ATTAAAAGTTAATATATTTTTTAATTTAATTTTATT 2588 30 100.0 36 .............................. ATTCTAAGTATCCATAAAGCTTGTTGAGCCACATAC 2522 30 100.0 35 .............................. AATGAAATAGGCAATTCATAATCTACAGTGTTTAT 2457 30 100.0 35 .............................. ACGTTTGAATGTGCTAAAATATAATCTTCAACTGC 2392 30 100.0 36 .............................. CATGAAACAATAGCTGAAAATCAAGAGAGGGAACAC 2326 30 100.0 35 .............................. AAAATAAGACATGCACTTCTTTTGCCATCTTTTGT 2261 30 100.0 36 .............................. CACCTTCTTTCTCTTTTGGTATCCATATTTATTCTT 2195 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAGCTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGTAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATC # Right flank : GCTCTTGCTTTAATTTTTCCTCAGAAATATCTTTATTAAAGAAAGTCAACCATCTTTGAAGTCTATCTTCTTTTAAATTCTTTTCTTCTAGTTTGTTAAATTTAGGAACCTCTATAAAATGAATTTCAACTAAGTCCGTTAACATATAGTCTTTGTATTCATCTTCCCAAAGGTGAAACTCAGTGTGAAATTTATCTAAGTTTATATATTCAAAATCTAGTATGTTTATAGTTATTACCTTTTTAAAATTTCTATTATGCTTTTTTTATTATTAGAACTAATATCTTTAAAATGACTAGTACACTAATTAAAATAAATAAAAATTTTTAAAATGAAAATATAAAATCATCGTTTACCAATAATCAAGCTATATTTTGACAAGTACCTGTTACCCTAGTGAGAAGGTTTATCTAAGAACCTGTTGCTAAAATAAATTATCCATTGTTTTTAGATATGTGATGAGAACTTATATATCCTCCATTTTCACTTTTAGATAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 41035-42316 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYX010000011.1 Clostridium botulinum C/D strain IZSVe-TV_6289_14 NODE_11_length_75201_cov_318.869_ID_6562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 41035 30 100.0 37 .............................. GCCTATATCGAATCGAATGAAGAGACTAAAAAGTTAG 41102 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 41167 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 41233 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 41300 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 41366 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 41432 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 41496 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 41563 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 41629 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 41695 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 41760 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 41826 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 41892 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 41958 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 42023 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 42090 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 42156 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 42222 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 42287 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 49229-50634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYX010000011.1 Clostridium botulinum C/D strain IZSVe-TV_6289_14 NODE_11_length_75201_cov_318.869_ID_6562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49229 30 100.0 36 .............................. ATTTGGTAATGCAGGTATACAAGTAGTACAACAACC 49295 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 49360 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 49428 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 49495 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 49561 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 49627 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 49693 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 49759 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 49824 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 49889 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 49955 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 50019 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 50085 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 50151 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 50216 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 50283 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 50347 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 50414 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 50480 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG AAAC [50504] 50544 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [50558] 50605 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.0 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //