Array 1 193010-192392 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOO01000003.1 Alicyclobacillus vulcanalis strain DSM 16176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 193009 37 100.0 35 ..................................... GGCAGTGACATCGCCTTTAAGAAAGGATCTCTGGC 192937 37 97.3 36 C.................................... GACGATGTATCAGTTGCTTGAACTTCGTCGGATTGA 192864 37 100.0 36 ..................................... TGGACAAGGCCTACGGGTAGGCACATGGTTTTTATT 192791 37 100.0 37 ..................................... ACCTTCGATGTCTGTACCTGTTGGCAGCTTTAGCAAT 192717 37 100.0 34 ..................................... CGGTCTTCGCCGCTCATGCGACGTCTGGGGTGAC 192646 37 100.0 34 ..................................... TCCATGTCATTGTTTGGGAATTCGCCGCAATTCT 192575 37 100.0 36 ..................................... GGATTAGAGACTGATCAGCTTTACAGGGATCTTTAG 192502 37 100.0 37 ..................................... CGGGATATGACGACCAAAACGCTTGTTGGTGTGCCGG 192428 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 99.7 36 GCTTCAATAGGGCCGCCGACGATCTCGGCGGAACAAC # Left flank : CAGTGGAGCACCGAGAAATCGGGCAGATCGCACTTGGTTGACGATCGTCGGAGGTCATTACGACAAAGATGGGTTTACACTCGCGTGGCCTATCTGGAGGGCTCCCGCGACTCTCGCGGCGATTCGCTTTATGCTTGCTCATCCGGGATTGCGCGACGGCCTGCGCCACATGGGCGTGGAACAGGTGATGGTTTCGCGGCGGATTCAAATCGAAAAGTACTTTAGTTTTACGCGAGCCCAGCCTCGCTTCGTAGAAGCGACCTGACGAGCGATAACGGCCAGAAATCAGCTGGGACGAGTGGGTTGAGTCAGATCTGCAAATACGACGAAATGGCCATCGGCGGTTTGTCCGTGAAGGCGCGGAAGACTGGCGGTGGCCTTTCTATTTGGGACTGAGGACGCTCAGAGGGGGGCGTCTAGCCCGGGTGGCGACTGTCTTGGCGGATCAACGCGCAAGGCGGTACAAACATCGGAAGTAGGTTTCGGGCTTCAAAGATGTG # Right flank : TCCATCCTCTACAGCCCAGTCCTGGCGCGGGTTCTCGGCCGCAAAACGCGAACCTACCCGCGGCGCACCCTGCGCAGACTTTCCAACTACCCTCATCATAGCCTCTCACCTGCCAAAAATCCAGTCCCCGTGCGACTTTTTCAGATCGCGCGAACCCCCGGGGTTTTCGCCGACGATAGAGGTTCGCGCGCCCGCCGCCAACCCGGATCCATCCACTTCACACGTTTCGTACAGAATCGATGCAGGATTCTCTACAATTCGCGGCGAATCGGTACCCACATCTTGAGGATGTGCCTCGGTACCTGCAGCCGGTACCCGAATGTCGGGCCCGCCGCCGTGGTCGCAAGGTCGCAGAGGTAGAGGGATGGCAGTACCTTGCGCTCTACGGGCGCCGACACGCCGTTGCCGCTCGCGTCTGGCGATGTGCGGGCAGCAGCTCAGCGCGACATCGCTTCGGTCTCGAAGCTGGCGTCGCCATCGTTTCCAGGCTCTCCGCGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATAGGGCCGCCGACGATCTCGGCGGAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 8103-7412 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTOO01000001.1 Alicyclobacillus vulcanalis strain DSM 16176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8102 37 100.0 35 ..................................... TTCTGGGTCCTCTGGGTAGGACTCCAGGACATCCA 8030 37 100.0 40 ..................................... CCCAAATACTCAACCCGGTATATCTTCTCAAAGGAATTAA 7953 37 100.0 38 ..................................... ACCGATGCCCGAAAAGACCGAACCGTAGTCGATCGAGC 7878 37 100.0 36 ..................................... AGTTCATCAAGCAAAGAAGGTTTATACTTCCCGGTA 7805 37 100.0 38 ..................................... GGGACCACCACGCTGCGCGCGTGATGAGCCCTAGCAGC 7730 37 100.0 36 ..................................... CAACAAGGTGTTTGCACTATCTTCAAATGCGGTGAT 7657 37 97.3 27 .......................T............. TACCGGCGCGGGGTCGTGCCCTGGTTC Deletion [7594] 7593 36 97.3 36 ...-................................. GTCAGCCTGTCGGAGGCCTGCGCCTGCCACGCTTCG 7521 37 97.3 36 ............G........................ CCGGCTGGGGGGCGGACCAGCCTAGCAGGGGGCGCC 7448 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.2 36 GTGATTCCGCCGAGATCGTCGGCGGCCCTATTGAAGC # Left flank : CCCGGGAATCAGCTGCAGGCCGAACGGATCGGGATGCGCGGCGGGCACGGCGTAGAGTTGGTGGAACGCCAGTTCCTGAGGATGGCCACAGGCCGAGCGGGTGGTGAAACGCGACAGGCATGGCGCCAGGCTGAAAGGATCATGTGCGCGAATGGGACGCTAGGAGGTGGTGGGTGCGAGTGATCGGCATGGAAAGAGGCGGGCAATTCGTGTGTATCCGATTATCACAGATGACAACTCACATAGAAGGCGCGTTGTTGTGCGGTTCCGGCCTCGCGGGAGGTAGCAGCCAGGTATTTGGTCATGTCACCGCGCGAACCTCCATCGCCGTCTTCAGCCCGGGGGGTTCGCGCATCGCGAAAATTCCGCGCCAGATCTGGACTTTTTCCGGTTCGGGAGGTATCCTATGGACGTGAAAGATGCTGCACAAGGGCGCTACAGAATGAGGTTCGCGTTTTTCGCCTGGCTTCCCGCGTCACGACTGGCCTGAGAAGGTTGCC # Right flank : CCCACGCCGCCCTTCACACTGGTGACGCAGATCACTGTGACTCCGCCGAGAGCGGCGGCCCTATTCGACCCGCAAACCCATGTCCCGCGCGCTGTGCGTCTTCCGGCCGGTCCCGGCCGATCCCGCCCGAATCCCCGGCACCCCACTTCGGCGCCCATGTCGATGACGTCCCCTGCGCCAGCTCACCACGTCCCCCGCAACGCCGATGACGACCGCCAACAAAGTTGCACAACCCTAGCCTCTCGGCCTCCTCGGCCCCCGCGTGAGCGCAAAAAGGCCGCCCATCACCGGGCGGCCATATAACAGCCATATAACACCCTTCCATGCGCCCCTGAGACGCTTTAGCGATACACGTCTCCCCCGCCGGCGCGAAAGGCTTCTGCTTTCTCCCGCATGCCCTCCTCAATGGCTTCTTCGAGCGCCAAACCGTGTGCTTCCGCATAGGCGCTCAGGTCCTGCGTGATCCGCATGCTGCAGAACTTCGGACCGCACATGGAGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCCGCCGAGATCGTCGGCGGCCCTATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //