Array 1 61598-62052 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBN02000009.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN051018 CFSAN051018_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61598 29 100.0 32 ............................. GAGAGCAGTAGTATGAAAAAATTGGTAATATC 61659 29 100.0 32 ............................. AGATCCGTTAACGGGGATCAGGCGGCCTGTTT 61720 29 100.0 32 ............................. TGGTCGCGGGCTGGAACAGTGTCTGCGCCGCT 61781 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 61842 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 61903 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 61964 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 62025 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 78198-79367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBN02000009.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN051018 CFSAN051018_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 78198 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 78259 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 78320 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 78381 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 78442 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 78503 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 78564 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 78625 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 78686 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 78747 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 78808 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 78869 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 78930 29 100.0 32 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAA 78991 29 86.2 4 ...............C.....GA....G. CTTG AACTCCTT [79008] Deletion [79024] 79032 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 79093 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 79154 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 79215 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 79276 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 79338 29 86.2 0 TAA.........T................ | A [79362] ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //