Array 1 97869-99849 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYZ01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM4582 BCW_8438_1__paired__contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97869 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97930 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97991 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98052 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98113 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98174 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98235 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98296 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98357 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98418 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98479 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98540 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98601 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98662 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98723 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98784 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98845 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98906 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98967 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99028 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99089 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99150 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99211 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99272 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99334 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99395 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99456 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99517 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99578 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99639 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99700 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99761 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99822 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115982-117458 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYZ01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM4582 BCW_8438_1__paired__contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115982 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116043 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116104 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116165 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116227 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116288 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116349 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116410 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116471 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116532 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116593 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116654 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116715 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116776 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116837 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116898 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116960 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 117021 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [117063] 117063 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117124 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117185 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117246 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117307 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117368 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117429 29 96.6 0 A............................ | A [117455] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //