Array 1 178611-176750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHE01000002.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N45941 N45941_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 178610 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 178549 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 178487 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 178426 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 178365 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 178304 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 178243 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 178182 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 178121 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 178060 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 177999 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 177938 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 177877 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 177816 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 177755 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 177694 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 177633 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 177572 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 177511 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 177450 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 177389 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 177328 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 177267 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 177206 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 177145 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 177084 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 177023 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 176962 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 176901 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 176840 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 176779 29 93.1 0 A...........T................ | A [176752] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11172-10412 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHE01000023.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N45941 N45941_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11171 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 11110 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 11049 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 10988 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 10927 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 10866 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 10805 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 10744 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 10683 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 10622 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 10561 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 10500 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 10439 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //