Array 1 303549-304184 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMX01000001.1 Salmonella enterica subsp. enterica serovar Tornow strain BCW_1594 NODE_1_length_426391_cov_2.88414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303549 29 100.0 32 ............................. GAGTGGCACGATAAAACGGCGTGGGTACAGAG 303610 29 100.0 32 ............................. CTACCGCAATAGCCAATCTCATTTTTCGTGGT 303671 29 100.0 31 ............................. CTACTTGGGTCTTTCGGTGCACCATAGGTTC 303731 29 100.0 32 ............................. CCCCATACCCGTTTTAACTGTGCATTAGTCAT 303792 29 100.0 32 ............................. TTAACTCCACCGTATCGCCCACCAGTAATTCT 303853 29 100.0 32 ............................. GCTATTCCTGGCTGTAGTCCGCGCTAATATGG 303914 29 100.0 32 ............................. CAGGACACCTCCTGTCAGTAGTTGGCACTATA 303975 29 100.0 32 ............................. AGGCTAACAGTGTTAGAAGGCGATCCTGGGGA 304036 29 100.0 32 ............................. GGCGCGTAGGATAGAATCCCTGGTTGTGGGAT 304097 28 96.6 32 ..........-.................. CGTGTCAATCCAACCTGCGATCCCGTTCTCAC 304157 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCCAATACCTGGGTCACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGATGTGCTTTCCCAGGCGCTGGAGCGTGCTAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320324-321635 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMX01000001.1 Salmonella enterica subsp. enterica serovar Tornow strain BCW_1594 NODE_1_length_426391_cov_2.88414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320324 29 100.0 32 ............................. CTGAGGGCGTATTCAGAACACTGGAGATATGG 320385 29 100.0 32 ............................. CAGACGCAATTAAATAGCGGTGGCATGACGGA 320446 29 100.0 32 ............................. GCATTAGCTACATCACAAAGACTATTTACGAA 320507 29 100.0 32 ............................. CAGTCGGATCAGACTCTGACTGGTGAAGAATC 320568 29 100.0 32 ............................. CTCGCTGCACTATCTGCGGCGGTTATTTCAAA 320629 29 100.0 32 ............................. AAATCACAGTAGAAGCCCTGGAGGCTCTCGGC 320690 29 100.0 32 ............................. TTCTTTACAAAGAGGAGGGCTACCCGGTTGCG 320751 29 100.0 32 ............................. GCGACGATTTTAAATGAAAAATGTCGGGGATC 320812 29 100.0 32 ............................. TCGTAGAAGCGATTAAAAAAGCCCTGTAAAGC 320873 29 100.0 32 ............................. GTGCGCATAGAGTCCACAGGTTGGTGTCATCA 320934 29 100.0 32 ............................. TGAGTATAAAAATCACCCATTGGCATTCATCA 320995 29 100.0 32 ............................. ACACCAGACAACGAAAGCAGCGCACCACGCAG 321056 29 100.0 32 ............................. AGAACTCAGCGACCGTTGACGCGGCTCAGGTT 321117 29 100.0 32 ............................. CACAGAATGCCGCCGCGCTTGCCTAAAGCGTG 321178 29 100.0 32 ............................. ATTAGACCTGTGGCAATACCTATTGCAGTAAT 321239 29 100.0 32 ............................. GCCCCGTTCTCTCATTAACCTACGATTTACTC 321300 29 100.0 32 ............................. ATTACTGATAATTCACCACTGCAGTACGGAAC 321361 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 321422 29 100.0 32 ............................. GTGACAGTGCGGCTCTCTGAGTTGAGCACAAA 321483 29 100.0 32 ............................. CGGCAATAACAGGAAAAGGAGAGGCCGACTCA 321544 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 321606 29 86.2 0 TAA.........T................ | A [321630] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACTAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTCATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //