Array 1 380853-379629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011368.1 Mycoplasmopsis canis strain LV chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 380852 36 86.1 30 .GAA..T.C........................... ACACATTTTTATTTTTATGTTATAATTATT A [380843] 380785 36 100.0 30 .................................... AGGAATATTTAGATTTTGTTGATGTTGAAC 380719 36 100.0 30 .................................... ATCAAAGTTGCAACATTATAAAAAGCGTAT 380653 36 100.0 30 .................................... TACTTTTTAAAACCTTACATTTTAAATAGC 380587 36 100.0 30 .................................... ATCAAAGTTGCAACATTATAAAAAGCATAT 380521 36 100.0 30 .................................... AACCATAATAACAACGTTTTCTCTGTCTAT 380455 36 100.0 30 .................................... AAAACATTATAAAATAAAAAAAATATTATG 380389 36 100.0 30 .................................... AATTTTATAATGAGTATATTAATACATACA 380323 36 100.0 30 .................................... TATATAAGGTTTTAAATAGTAGTTCGTTTT 380257 36 100.0 30 .................................... AATAATAGAACAGTTAAGATTGATAGTAAA 380191 36 100.0 30 .................................... TAACCTCTTCGTTTAAATCGAAGTAGTACA 380125 36 100.0 30 .................................... AATTGACATAAACTCCGCTTCATTTGAGTT 380059 36 100.0 30 .................................... CTGCTAGATTTTTATAGTTGGCGACATTCA 379993 36 100.0 30 .................................... ATAATCTCGCTAAAGGGCTATGTAAGATAA 379927 36 100.0 30 .................................... AAATTAAAACCTAAATTGTTTAAATCTTTT 379861 36 100.0 30 .................................... TCATGGAAGGGCGGTCTTAACGACGAGCAT 379795 36 100.0 30 .................................... AAACTAAAAAAGAAAATTCATTTTTATTAA 379729 36 100.0 30 .................................... TTTATAACCTGCTATATGTGAAACTGCGTA 379663 35 94.4 0 ............................-......G | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC # Left flank : AATCATATGCCACAATAACCAAAAGAGGTTCAAAATATATTCATCAAGCTTTAAGCAATATGATTAAGAAGTTTGATTTAAACATTAAAACCTTAACTGTTGATAATGGTAAGGAAAATGTTTTATTACACAAAATCATTCCTAAAGAAAGACTATTTAAATGTCTTCCATATAGTTCATGGCAAAAAGGCTCCATCGAAAATATGCATAGATTAATAAGGTATTTTATTCCTAAAGGTAAAAGTCTTGATAATTATACTCAAGAAGAAATTGATTTTTTGATGGAATGAATAAATAACTATAGAAAAATTATTAATCAACCTTAGATTATTTTAACCCCACACCCTTGATTTCAAACAAGGGAGCCTTACTTTTTGAAAAAGTAAGCAAAAGCGGCGAGAAAACTTTTAAAGTTTTCTATTTTCCTATACCTTTTTGTATATTTAAAATTTGATAAAATTATTTTAGAGTTTTTTATTACATCCTTGCAAATGACTTTT # Right flank : TTTAAAAAACATTCAATTTATTTTGAATGTTTTTTTTAAATTTTAACCTTTGAAATCATATAAATGGCCGCAGTTTCTGCTCTTAAAATTCTTTTTCCTAAAGAAACGCAATCAACGTTGCTATTTAAGGCAACTTCTATTTCATTATTAGAAAATCCGCCTTCAGGCCCGATTAAGAATAAAACATTAGAATCAATATTATCTTCAATTGAAACTGATTTATCTTGCTTTTCATGAGCAATTATTTTCTTATATCCCTCCATTGTTATTACATCTTCAAATTTGTGTAAATTCGTTAATTCAGGGATAATGTTTCTAAATGATTGCTCAGCTGCATTTTGTAAAATAGTTTGAAATCTCTCTAGTTTTTTTTCAAATTTATTGAATTTATATAATTCGCCATTAGTATACTCAGTAACCATGGGAATTATTTTTGTAGCCCCTAATTCAGCCAATTTTTGAAGTGCCCATTCAAATCTTTCGTATTTAATTAAAGAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 383386-382294 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011368.1 Mycoplasmopsis canis strain LV chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 383385 36 100.0 30 .................................... TTAAAAGGTTAATTGATTATATTCAAAAAC 383319 36 100.0 30 .................................... TGAATAACAAAATAATAATATGAGCCTTAT 383253 36 100.0 30 .................................... ATTTAAATTATTATATTTTTGCACCCAATA 383187 36 100.0 30 .................................... ATAAGTATTATTTATTAATATCAAAATAAA 383121 36 100.0 30 .................................... GAAAAAAAATTCGTATCGCTTTCAACAGTG 383055 36 100.0 30 .................................... AAGAGTTACACAATTTGGCTTATGAAGTGG 382989 36 100.0 30 .................................... TTGAAGAGTATGCAGAGAAAGAAACTCCAC 382923 36 100.0 30 .................................... ATTATTTATGTTTTAGATGAGTTGGAGATT 382857 36 100.0 30 .................................... ACCATCGGGAGATATGATGAAAACTCTTAA 382791 36 100.0 29 .................................... CTTCTATTATCTGTATAATTCCAGCAAAC 382726 36 100.0 30 .................................... TAGCAGTTTTGAATGCTTGCTCTGCTTCTA 382660 36 100.0 30 .................................... GCATACCAGACATCTTAATAACTTCAATAA 382594 36 100.0 30 .................................... ATCAAAGCGTTAATATTATTAAGAGCGTTT 382528 36 100.0 30 .................................... ATCAAAGCTGTAACATTATAAAAAGCGTTT 382462 36 100.0 30 .................................... AAAGTTTAGGTTATAAGATTGATGTATATA 382396 36 100.0 30 .................................... CTATGTTCTTAAAAGTTTTATCATTCTTAA 382330 36 80.6 0 ......................TAT...TT..A..G | G [382298] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.9 30 GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC # Left flank : TTAACAAAAACTACTTACAAAATATTGCCAATAAAGTGAATAAAAAGATAGGTTATGATTTGGTTAACATAAATGAATCAACTAGTAAATTATTTAAGTCAATGTTCGATATTAAAACAAAAGAATTTATAACATCAAGTTTGTTATACAGTTTTTTAAGAAACATATCACAAGCAGAAAAACAAAACATAATAATCAAAGATATGGATGATATAAGTCTATCTTTTTTAACAGAATTTTCAAATGACTTCAACATTATAGTAATGACCAATAATTCATTTAATATAATTAAAAGTTCTTCAGAGGTATTATTAACAAATTTTGTGGATGAAAATCTATATACGATAAAAAATATAGATAATGAAAGCGTTTTTGAATATTTCATTGAAGAATATTTTCAAAAACCGTTTGATAATGTTAATCCTGATCTTATTTACACAAAAGAAACAATGGAAAATATGAAAAAAGCTTTATTTTTAAAATAAATTCTTTGTAATGAG # Right flank : TCATATGCAAGTTAAACATGCATATGACTTTGTTTTTATGTATCCTGTAATAAAATAAATGTGCAAAAATAAGAAAGGATACATTAATATTATAATGAAAAATTTAAGAAAATGAATTTGTATTTTTGATCAATCAAAGAAAGAAAATAAATATACTCATTATGAAATTGCAGAAAATATTGATACTATTTGAAAGTTCCAAGGAAAATTAGAACTAACTAGAAATTTACAGAAAAAACAAATGGATATTGATTTAGTTTATAACGCTTTGTTTGAAATTAGTCAAGGTATATCAATTCAAAAAGCCTCTAAAAAAATAAAAAGAGATGTGAGAACAATAAAAAACAAAATTGATCTTATGACTAGTAAACATTCTAAAGATTTATTAAAATACCAAAGATTTCAATGTAACAATTGTTTTAAAAGAGTCACAAAGGTTAAAGTTCTCCATTTTTCTAAAATGTATGATCATTTATTGAATTATAGATACTCAAGGCTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTGTTGTACAATATTTGGGTAAACAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //