Array 1 17139-18754 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZNJ01000056.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N29304 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17139 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 17201 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 17262 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 17323 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 17384 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 17445 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 17506 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 17567 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 17628 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 17689 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 17750 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 17811 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 17872 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 17933 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 17994 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 18055 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 18116 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 18177 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 18239 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 18300 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 18361 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 18422 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 18483 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 18544 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 18605 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 18666 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 18727 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35037-36934 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZNJ01000056.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N29304 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 35037 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 35098 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 35159 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 35220 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 35282 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 35343 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 35404 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 35465 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 35526 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 35587 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 35648 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 35709 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 35770 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 35831 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 35892 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 35953 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 36014 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 36075 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 36136 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 36197 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 36255 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 36316 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 36377 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 36438 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 36499 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 36560 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 36621 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 36682 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 36783 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 36844 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 36905 29 93.1 0 A...........T................ | A [36931] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //