Array 1 317-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWL010000035.1 Streptococcus thermophilus strain CF10_14 NODE_35_length_7555_cov_17.321067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 316 36 100.0 31 .................................... AAACACTTGGTCCATTACTCAGTCCTCAGAG 249 36 100.0 30 .................................... AGATACGTCAGTTGTGTTTAGTCTTGCTAC 183 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 117 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 51 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CCAACCCAGACATTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124726-125619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWL010000003.1 Streptococcus thermophilus strain CF10_14 NODE_3_length_125623_cov_32.950429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 124726 36 100.0 30 .................................... GAAATTGAAATAATTCGAGAAATAGAACTC 124792 36 100.0 30 .................................... TATTACTCTTAACTGGTTGTTCAGAAGCAA 124858 36 100.0 30 .................................... CATTTAAGAGCATGTTAGACAAAGAGATAA 124924 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 124990 36 100.0 30 .................................... ATATTCATATTCCCTGCTCATGTTTGATAG 125056 36 100.0 30 .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 125122 36 100.0 30 .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 125188 36 100.0 29 .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 125253 36 100.0 30 .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 125319 36 100.0 31 .................................... GTGTATTTAGTAATGGTGATTTTTTAAATTT 125386 36 100.0 30 .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 125452 36 100.0 30 .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 125518 36 100.0 30 .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 125584 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : CTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50273-49973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWL010000013.1 Streptococcus thermophilus strain CF10_14 NODE_13_length_50290_cov_27.232587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50272 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 50206 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 50140 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 50074 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 50008 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAATAATACCACATTGA # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 48-1270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWL010000014.1 Streptococcus thermophilus strain CF10_14 NODE_14_length_48853_cov_25.634616, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 48 36 100.0 30 .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 114 36 100.0 30 .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 180 36 100.0 30 .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 246 36 100.0 30 .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 312 36 100.0 30 .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 378 36 100.0 30 .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 444 36 100.0 30 .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 510 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 576 36 100.0 30 .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 642 36 100.0 29 .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 707 36 100.0 31 .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 774 36 100.0 30 .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 840 36 100.0 30 .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 906 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 971 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 1037 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 1103 36 100.0 30 .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 1169 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 1235 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTTAAGTAACTGTACAACCTTTTTTTAAATTAATTTATCGTAAGCAAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //