Array 1 942323-947262 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJM01000001.1 Erwinia amylovora strain RISTBO01-2 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 942323 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 942384 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 942445 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 942506 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 942567 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 942628 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 942689 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 942750 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 942811 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 942872 29 100.0 32 ............................. TCCTCCTGCAGGCGGAGCATGAGGATAAAGTC 942933 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 942994 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 943055 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 943116 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 943177 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 943238 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 943299 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 943360 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 943421 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 943482 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 943543 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 943604 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 943665 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 943726 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 943787 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 943848 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 943909 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 943970 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 944031 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 944092 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 944153 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 944214 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 944275 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 944336 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 944397 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 944458 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 944519 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 944580 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 944641 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 944702 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 944763 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 944824 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 944885 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 944946 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 945007 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 945068 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 945129 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 945190 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 945251 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 945312 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 945373 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 945434 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 945495 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 945556 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 945617 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 945678 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 945739 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 945800 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 945861 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 945922 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 945983 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 946044 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 946105 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 946166 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 946227 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 946288 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 946349 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 946410 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 946471 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 946532 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 946593 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 946654 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 946715 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 946807 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 946868 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 946929 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 946990 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 947051 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 947112 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 947173 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 947234 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 81 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 956302-959688 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJM01000001.1 Erwinia amylovora strain RISTBO01-2 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 956302 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 956363 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 956424 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 956485 29 100.0 32 ............................. CCTTCAGGCCGCTGGATAGATGCTAACCCACC 956546 29 100.0 32 ............................. CCGGCACCAAATGCTTATCACTGCCAGCGGCG 956607 29 100.0 32 ............................. ATTTCTGGATTAACACTCAGGCGGCTCATGAC 956668 29 100.0 32 ............................. GTCATTCATACGGGCTATACCGTCCTCCAGAT 956729 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 956790 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 956851 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 956912 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 956973 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 957034 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 957095 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 957156 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 957217 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 957278 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 957339 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 957400 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 957461 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 957522 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 957583 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 957644 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 957705 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 957767 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 957828 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 957889 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 957950 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 958011 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 958072 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 958133 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 958194 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 958255 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 958316 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 958377 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 958438 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 958499 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 958560 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 958622 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 958683 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 958744 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 958805 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 958866 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 958927 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 958988 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 959049 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 959111 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 959172 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 959233 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 959294 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 959355 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 959416 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 959477 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 959538 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 959599 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 959660 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 969148-969476 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJM01000001.1 Erwinia amylovora strain RISTBO01-2 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 969148 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 969208 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 969268 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 969328 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 969388 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 969449 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //