Array 1 76014-76572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBT010000006.1 Lactiplantibacillus pentosus strain 1.8.18 assembly_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 76014 36 100.0 30 .................................... GTGTATAACGTTTCAGATTAAGCTACCACT 76080 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 76146 36 100.0 30 .................................... TGGCGCTGAAGCTGCGGAACTGGTTCACGG 76212 36 100.0 30 .................................... TAATTATTTGCAAAGTGGCTGGTGTAGACC 76278 36 97.2 30 ............................C....... TTTCCCGTTCAACATAGAAGTGTAAAGTTT 76344 36 100.0 30 .................................... CCTTGCTGACGGTAAACAGCGCACCAGATA 76410 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 76476 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 76537 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 96.0 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGAATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : TAACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1992-1433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBT010000003.1 Lactiplantibacillus pentosus strain 1.8.18 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 1991 28 96.4 33 ..........T................. TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGG 1930 28 100.0 33 ............................ TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGG 1869 28 100.0 33 ............................ TGTGATGCTGCAAGGCTGGCGGTTCAAGTTCCA 1808 28 100.0 33 ............................ CTTCAATCTGTGGACGTTAACGATCGCCCAATT 1747 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 1686 28 92.9 137 ..T..........G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 1521 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 1460 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 8 28 94.6 48 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGATCAAACATTCACGCCTATTAAACGTTGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGTA # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-1.47, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1935-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBT010000037.1 Lactiplantibacillus pentosus strain 1.8.18 assembly_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1934 28 100.0 33 ............................ CATTGGGCAGTTCGCTGGTTTAACATCTCAATA 1873 28 100.0 32 ............................ CAATATGATAAGGTCGACAACTACCGCCACGT 1813 27 96.4 33 .....................-...... TGACTGATGTACGAGGTATCAAGCGAATTGTTA 1753 28 100.0 33 ............................ CTTGTCCAATCAATAAACCTATCGTATCAGTTT 1692 28 100.0 34 ............................ TGGAGGACAAATAGCCTCACTGTTGCTTGGCCGC 1630 28 100.0 33 ............................ TGAGTGACGGTAAATTAAACCGCGCAACTATCA 1569 28 100.0 33 ............................ TATCAGCGCTAACTAATGCAAACCGCTGCTTGG 1508 28 100.0 33 ............................ TGTAAGGGTCGTCAGTTTGTGAATAATCTATCA 1447 28 100.0 34 ............................ CCAAATTTCGCCAACCATTGCGACGATTGCTCGC 1385 28 78.6 33 ..A.C..........A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 1324 28 78.6 0 .....T....C..G..TA........T. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 95.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : AATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGCGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTGGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGTGCGATTCGTTAAATCTTGAGAAGCGATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACGCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATTTA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //