Array 1 31273-31749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFDU01000047.1 Bifidobacterium longum subsp. longum strain BLOI2 BLOI2_C47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 31273 36 100.0 29 .................................... TAGCTATATAATATATATATGCGCACTGG 31338 36 100.0 28 .................................... ATTGGTTCGCAGTCCTTGTAGTAGAGAC 31402 36 100.0 17 .................................... CTGGCGGTCGCGGACCG Deletion [31455] 31455 36 66.7 28 GCT...C.C....CTTATCA................ ACGAACACGCTTCCTGCAGGCAGCAGCT CA [31466] 31521 36 100.0 29 .................................... TGGAGGTGACACCATCGCCCATGTCGTTC 31586 36 100.0 28 .................................... CCAGCAAGGAAATCCCTAATCAAAGATT 31650 36 100.0 28 .................................... ATAATTTTCATCATATTCGCGTAAAAAC 31714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 95.8 27 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TAGCTACTAGGCGTGTCGCGGTTGCAGACAAGCTTATCAAGAAGGGTGAATGCTAATT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 10-689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFDU01000048.1 Bifidobacterium longum subsp. longum strain BLOI2 BLOI2_C48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 10 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 74 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 139 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCN 203 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 267 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 332 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 397 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 462 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 526 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 590 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 654 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 11 36 98.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CCTCATGCCC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //