Array 1 431176-433605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASAL010000001.1 Yersinia kristensenii strain SCPM-O-B-7962 (C-136) 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 431176 28 100.0 32 ............................ AAAGGGCGGGGGTAATTCAGTGCCTTGGGACC 431236 28 100.0 32 ............................ TTATGCGCGGCGCGACACAATCAACTGATTAA 431296 28 100.0 32 ............................ AGCAATGACGTGCCGGAACCCAATATTGTTCG 431356 28 100.0 32 ............................ GCCATCTTTACCAATGTGCTCAATTACCTGTT 431416 28 100.0 32 ............................ TGCTGCGTGGCGGCTCCGGCGAAATGTGGCAC 431476 28 100.0 32 ............................ TTAAGCCTGTTCAAGCGGCGTTAGATAATTTA 431536 28 100.0 32 ............................ GGCACGACCGGTAATGATTTTGATAACGCATT 431596 28 100.0 32 ............................ AATCGCTGACACAGTGAGAGGCAACCCCGTTT 431656 28 96.4 32 A........................... TGCGGCCTCCGAACCATTAAGCTGTGGCGCTT 431716 28 100.0 32 ............................ ATGCGTATAACCATCACAGCGCCGGACATCGG 431776 28 100.0 32 ............................ GGCTCAAAAACTTGAGCAACTCAACATCAAAA 431836 28 100.0 32 ............................ ACACCCCCCATATCAATCGCCACCCGCACAGT 431896 28 100.0 32 ............................ GTCTGGCAGCGGCACAATATCCACCGCATGGC 431956 28 100.0 32 ............................ GATACACCCGCGAAGAACTCGACAGCATCAGA 432016 28 100.0 32 ............................ TGGTTGGATAAGCGCCTTGTTGGTGATGAGGT 432076 28 100.0 32 ............................ GCTTGCAAGTGGAAGATATCGCCGGCACATCC 432136 28 100.0 32 ............................ ATTCGCGGCCCGGCAAGGTCACCGTCCAGCTT 432196 28 100.0 32 ............................ ACATGGATCAGGTCACCGTCCATATTCACATC 432256 28 100.0 32 ............................ GTTTGATGTGTTGTTCTACGCCAAGGCTGGGG 432316 28 100.0 32 ............................ CTGGCGGCGCATCTGAAACTGGCGCTTATGCA 432376 28 100.0 32 ............................ ATGACGCCAGTGCGAAGAGCTATACCGAACAT 432436 28 100.0 32 ............................ GACTTGTGGCTGGTCTGTCCGGAAACCAGTAT 432496 28 100.0 32 ............................ ACGTGTTCGGGACGCTTTCCTACATATCCAAC 432556 28 100.0 32 ............................ GTAAACACCCCCGGATTACCGACATCAATCAC 432616 28 100.0 32 ............................ CGATTGAGCGCAAAGCATCTTCGGCGCTCATG 432676 28 100.0 32 ............................ TGACTGGTTCCCGCTGGCGCAAAAAGCGAATA 432736 28 100.0 32 ............................ CATACTCGCCGCTTGAGGTTCAGGTAAGTTCT 432796 28 100.0 33 ............................ CGATAAGAGCAACAATTTTTTTATTTTTCTTTT 432857 28 100.0 32 ............................ TCTTTCCCGGCTAATGCCATCTTGATCACCCG 432917 28 100.0 32 ............................ TCTGTGTTCTGCAACCCATGTCACTATCAGTG 432977 28 100.0 32 ............................ ATGCAGCTAGCCACCTTTGCCACAGTCATTTA 433037 28 100.0 32 ............................ CAAATCACGACGAGCCATAACCGGGTATGATG 433097 28 100.0 32 ............................ TAGTTGAGTGAGGGAGAGTCCCGCGCAAATAA 433157 28 100.0 32 ............................ CGTCAACGAATCAAAGCTCTTGAAGATGCACT 433217 28 100.0 32 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATAC 433277 28 100.0 32 ............................ TTGCGCCGCTCATCAATCTCATAATCATCACG 433337 28 100.0 32 ............................ CTTGCCGATGGTGCGTTGCTTTAAGGTCTTGA 433397 28 100.0 32 ............................ TGATCCAGCCGCGCGGGGTTTCATCGCTGACT 433457 28 100.0 32 ............................ GGCTTAGTCAAACTGTTGATTGCCGAGCGCAG 433517 28 100.0 32 ............................ GATGGCCAGCGCGTAGAACTGGAACGGTTGAA 433577 28 85.7 0 .....................AC.TC.. | G [433599] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTGATAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCGATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 442102-444050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASAL010000001.1 Yersinia kristensenii strain SCPM-O-B-7962 (C-136) 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 442102 28 100.0 32 ............................ TTATCGCGCCGCAGCAGAATCTCAGCGGCAGG 442162 28 100.0 32 ............................ TCATCTAGTGGTCTTATTGCTGCCACCGGTTA 442222 28 100.0 32 ............................ AGCAATTCAGCCCGCAAGCTGGCGGCGGCGGT 442282 28 100.0 32 ............................ TCCCCCAATCTGACCGCGCCAGAAATCAGCAA 442342 28 100.0 32 ............................ CGAGGGCGTGACTGAAAAAGTGTTGGCGGCTA 442402 28 100.0 32 ............................ AACCTGAGCCACGCCAGCAACTACGAGCTGTT 442462 28 100.0 32 ............................ ATTTCCAGCACAACGGCAGCGGTTACCAACTC 442522 28 100.0 32 ............................ AACATATGCGTGATATGGGCAACACCCAGGGA 442582 28 100.0 32 ............................ CCAACTGAAGCGGCGAGACACTCGAAACGCTT 442642 28 100.0 32 ............................ ATCATGTGCATCACCATCATCATGCGGGCGAA 442702 28 100.0 33 ............................ TCTTCGGGGGCGCAATCTAGCGAGGTATAGCTA 442763 28 100.0 32 ............................ ATATCCGAAACATAAGATAAGCAACAGTATTT 442823 28 100.0 32 ............................ ATTCAGACACGGAGTTTTTGAGGGTGATTGGC 442883 28 100.0 32 ............................ AAACGCCCAGGGGTGTACGGCCACGGTCGAGC 442943 28 100.0 32 ............................ AGAATGTCTGGGGCTTCTACACTTCCGGAACG 443003 28 100.0 32 ............................ TGGTACCTAAGCTCCAGAGCATTACTTGCAAG 443063 28 100.0 32 ............................ AATACAAATAATTGTGTGCCGTCAGTTACTGC 443123 28 100.0 32 ............................ ATGGGGGAAGCGTTTTTGCAGCCGGATAAGGT 443183 28 100.0 32 ............................ TTGGATTAATGCCACATTGTTGAACGGGTGGG 443243 28 100.0 32 ............................ GTAACGAGCTGCCAACACAGTGTTATCTTTCC 443303 28 100.0 32 ............................ ATTTCAAGAATTGATCCGAAGTTGGTGTTCCT 443363 28 100.0 32 ............................ AGTCATTGTCCCGCCAGATAATGACAATTTGC 443423 28 100.0 32 ............................ TAAACCGCCATTGCTGAATGCTGAACCGATAA 443483 28 100.0 32 ............................ AGATGAATTAACAGCTAGTTCTACACCCGTGC 443543 28 100.0 32 ............................ ACTGAAGTACTCGAGTGGGTTAACAGTCAAAT 443603 28 100.0 32 ............................ TTGAAGCAATGAATCAGACGATGGCGACCACT 443663 28 100.0 32 ............................ AGCTCATGCCGATGCAGCGGGAAAGGCACTGT 443723 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCTGTAGCAGCT 443783 28 100.0 32 ............................ ACAGTTACTTTGACGCGTTGCAATAAGGACAT 443843 28 100.0 32 ............................ CTCCGTACTGCTGGCATTCGAATCAAGGGAGA 443903 28 100.0 32 ............................ ATTAACCCGTGCTCAATCAGTGCCGCGTCAGT 443963 28 100.0 32 ............................ GGAAAGCTAAAGCGCAACATCATCATCGCTAA 444023 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : ATCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGTCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //