Array 1 93031-94138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047628.1 Lactococcus raffinolactis strain Lr_19_14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 93031 36 100.0 37 .................................... GGAAAATTTCTTTTTGGTGCTTATGTTATTTTTCAGT 93104 36 100.0 37 .................................... GAATCTTCTGTGATTCTATGTTCAAAATTACTCATTT 93177 36 100.0 37 .................................... GGAAAATTTCTTTTTGGTGCTTATGTTATTTTTCAGT 93250 36 100.0 33 .................................... CTGCTCACGCTTTACCTTGTTAGTCTCTAGTGT 93319 36 100.0 37 .................................... ATCAGGGTCACCTGCACTTTTGATTGTTTTGAATTTG 93392 36 100.0 37 .................................... TCTTCAAGCTCAATCATCAAAGCATCGTAATCTTGTT 93465 36 100.0 33 .................................... TCATTTCATCTTCTCCTTAATCAAATACTGCTC 93534 36 100.0 37 .................................... ATTGATTTTATTGATATTATAGATATTATTTTAAAAA 93607 36 100.0 35 .................................... CTCTTTAAAACTAAAATCACGTTCAAAGTGAACTC 93678 36 100.0 39 .................................... CAATTTCGATAATATCCTCTATTTCAAAACTTGCAATCA 93753 36 100.0 35 .................................... TATTTTTCTGCATATAAAGTCGCTTGATTTTCCAT 93824 36 100.0 36 .................................... TAATTAGTTTTGTTCCATATTCCATAATATTTACCT 93896 36 100.0 36 .................................... AGCGATGATGAATTTGATAGCCATAATATAATCTCC 93968 36 100.0 37 .................................... ACTCCAATATTCTACATTTTGTCCATTGTGCTTATCT 94041 36 100.0 26 .................................... TGTTCGATTGTTTCGATTGTCATTTT Deletion [94103] 94103 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 100.0 36 AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Left flank : TAAGGATTTTGGCATCAATGGCGCATGAATTTAAACTTGTATTCTCAGAAGAATCTAAACGTGATTTAAAGCAGATTTACGACTACATTGTTTTAAATTTCTTCTCTGAAATTTCTGCTCGTAGAAAAGTTGACTTACTTTTGTCAGGAAGTGAAGTGTTGGAGAAAATTCCAGAATTAGGTTTTGATGTTTTTCAAAAGACAGGTAAAAAATTTCTGGGAATGGAAAATATTCGGATTCTAGTGATTGAAAAATATTTGGCAGTTTATCAGATTGATTTTGAAGAAAACACAATCAATATTTTTCGTTTTTTAAATATTAAAACCAATTATTTACGGTACTTGAGATAGCTTTTTACTTGGATTTTTGCTAAACTTAAGAAATAACAATTAAACTTTTTCAATCTACCTGTAGGTCAATCTAGCCCATTGTTTTGGTCGATATTTGACCAAGACAATAGCGCGGAAAAGCTTACTACAAACACGTTTTTAAAGTTCTCT # Right flank : CCATATGATTCAGGTATTGCTTCTACACCAAGTTTTAAAGGGCACCTCTAATAATATTTGGGATACTTGGTTTTATATTTTCAATTACAGCTTTATGGCTAATAGGAAAAGAAACATATCAAACAAATAAAATAAAAAAATACACTAGTTATTATAACCCATAATGCCGTTGATTTTGATATTGGTTGTGTTAGTAAATCATCGAGGATCGGAATTCGACTACCAATTCCAAGTATCGCATCAATTATAATTAAGACATAAAAAGTAATCAGAAATGGCATCCGTTTACGCTCAATTATGAATATTATTGTTGTGATAACTAATAAGATTAAGATAATACCAATTCCCCACCAACCTGGTATCCTAAAAGAAAGTGGTGTTTTAAAAAAAATACTCCCGATGATTAGGCTAACAAAAATTACAATACCAAAAGCATAATTGGCGGACCTATTGTTGCAATTGTATGTGGGGTCGGAACTTACTACTATATCATGAGAAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1420827-1418083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047628.1 Lactococcus raffinolactis strain Lr_19_14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1420826 36 100.0 30 .................................... AATGTTTAACCTACTGACAACACAAAACGA 1420760 36 100.0 30 .................................... ACGGTTAAGGAAAGATATTTTCACGCTCTC 1420694 36 100.0 30 .................................... ATCAGTTTGAGGATATCATCTTAATGCAAT 1420628 36 100.0 30 .................................... ACGCTCCCAATTTCCGTGCCTTTCGCTTGC 1420562 36 100.0 29 .................................... ATAGACACAGGAGATATTGTATTCGCAGA 1420497 36 100.0 30 .................................... CCACGTTCTTAGCTAAAGGTGTTGAGATAT 1420431 36 100.0 30 .................................... GCATCATTTAGTGTATATTGCATGTTTGCA 1420365 36 100.0 30 .................................... AAGTGCAGGGCAACAAGTTATAAACGATGC 1420299 36 100.0 30 .................................... TGTTGAAAGCTATGCTATATAGGAGAATAC 1420233 36 100.0 30 .................................... GTACGGACTTGAGCTTGACACATTCGGTAA 1420167 36 100.0 30 .................................... TTCATCATAGCCATAGCCGTCACAGTACGC 1420101 36 100.0 30 .................................... TATTGAAAATAGCGAAACTTTAGACACTAG 1420035 36 100.0 30 .................................... ATCTTAATTAGATTATACCACAGAAAGGGG 1419969 36 100.0 30 .................................... AAAGACTTATGTCAATAATGACTATCAGGG 1419903 36 100.0 30 .................................... GCAGGTTCAGAAAAAGTAAATCTGATAACA 1419837 36 100.0 30 .................................... TATGGAATTTACGGAAAACACAGTCGTCCG 1419771 36 100.0 30 .................................... ATAAGTACCCATACTTGTCAACTTGCGACC 1419705 36 100.0 30 .................................... CATTTTGTGATAATTGCATAATCACTGCAT 1419639 36 100.0 30 .................................... GACAGATAAAATCACGGAGTTCAACGACCT 1419573 36 100.0 30 .................................... CAAAGTAGCGGACGAAGCTCAAAAAGAAGC 1419507 36 100.0 30 .................................... ACGGCTGAAAATGACCTAAAAGCCATGGGG 1419441 36 100.0 30 .................................... ATATCTTAAATCCAGTCACTCATGAAGTCA 1419375 36 100.0 30 .................................... GTTAGCTCAGTTGGTAGAGCATTGTACTGT 1419309 36 100.0 30 .................................... CTTTTGAGTTTTTAACTACCTTGACATAGC 1419243 36 100.0 30 .................................... TTGAAGAAAGTCCGCTTGCACTACCTCGTG 1419177 36 100.0 30 .................................... TTTCAAACTTCTATGCTGTTGATTGCGATG 1419111 36 100.0 30 .................................... CAGCTGTTGAATCTATTGGCATTGAGGTAT 1419045 36 100.0 30 .................................... CTTTTTTTGCCCATGAAAGCCATAAAGCGG 1418979 36 100.0 30 .................................... GCCGACCCGCATATCCTAGACTATCACTTT 1418913 36 100.0 30 .................................... GCAAAAAAGGTAACGCCATCGGTTACTTGT 1418847 36 100.0 30 .................................... ATCCATTCCTCAACGCATCCAAATGTATGG 1418781 36 100.0 30 .................................... ATATATAAAGTAAATAAAGGAAAAAGAGGA 1418715 36 100.0 30 .................................... TCTTTCCATGCGCTAGTCTTTCCTAGCAGT 1418649 36 100.0 30 .................................... TAATGGTTGCAAGTGACCCAAACCCCATTT 1418583 36 100.0 30 .................................... TGATACGATTCTCAAATTTTGAATCTCTAA 1418517 36 100.0 29 .................................... GACCTGAGTTGTCTGGGCACCATATTGGA 1418452 36 97.2 31 ...................................A CTACGGATTCAAACCGATGGAATCACTGTCT 1418385 36 100.0 30 .................................... TAGAAGATGCGACCTTACAGAATCAGAGCT 1418319 36 100.0 31 .................................... CACTGGGCGAAAATAGAAGGTATCGCAGTAG 1418252 36 100.0 30 .................................... CAGTAGATAAGACAGAACTGTTCACACAGA 1418186 36 100.0 30 .................................... ATATCTCAACGTTTCCTATCTGCTTGACAC 1418120 36 77.8 0 .........................T.A.TGG.CTA | AG [1418089] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.4 30 GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Left flank : ATTGGTTATGAACTATTAGATCACGAACTTGATTTAGAGCAAGATGAAATTACTATCCAAGAATTATTTCAGGTGCTAGGTGTTAAAATTGAGACGTCAAGTGATACTATTTTTGAAAAGCTATTCGAGATTTTACAGATTTTTAAATATTTATCCAAGAAAAAGATGTTTGTTTTTATCAATGTTGCGAGCTATTTGACTTTGGAAGAATTGCAAGCAATTCAAGAATTTTGTGAGTTGCAAAACCTAAAAACTCTTTTCTTGGAACGATATAAAACACCCGGATTTCCTCAGTATATATTGGATTCCGACTATTTTATTTGCACTGAAAATATGGTATAATTAAGGAAATATAAGTGTTTCAACACTTGAAATGTCCTTTGAAAATTTAATAAAATAAATTAAAAATCAACACCATGACATTCATTATTCTGAAGTCCTTCGCTAGGACAAATAGCAAAAATCTGAGACCTTAAAAATGTAGAAAAATTTTCTCCGAG # Right flank : GATTTGGATAAAAAAAAGACCTCAAATGGTATTTTTTTGACTCTATGAGTTATGTTAAAATTAGTGCATTGTTTTCAAGGCATTCAATACCACCAAAATTAGAAATAGAAAAATACAATTCATTGTTTTTTACAACTAAAAAGATATTCTATTTCCGTTACTAGTTTCTTAAACATCACAATAATTTGCAAGCACCGTCACCTATTCTCACATCTACCCCTAAGCAACTCTCTAACAGCTTCACGATCCTCATCAGAGAGAGGATATCCATCAAATGAAGTAAATGAATCAAGAACAGTATTTAAATCATCAAATTTTGATGATTTTTTTTCGTCTGTATTACCTAGAAGATAGTCAGTTGAAACACTAAAAAAGTCAGCTAGTTGTTGAATATTTTTAGGATTTCTTTTTCCGTTTTCCCAAAGAGCATAGGATTGTTGAGAAACGCCAAGTTTTTCAGCGATCTCTTTTTGAGTAAGTTTAGTTTCTAAACGCAGCGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1898253-1896751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047628.1 Lactococcus raffinolactis strain Lr_19_14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1898252 29 100.0 32 ............................. GGAAGAGAAAATTAAACAGCTGGAATTAGATG 1898191 29 100.0 32 ............................. GAAAGAGAATCAAAAGTGGGCGTGGAGAACAA 1898130 29 100.0 33 ............................. CTGATTGAAAACCTTTCTTTAAATATTGATTTA 1898068 29 100.0 32 ............................. TACCAAGTTATCGAAATTTGAATATTCATCAG 1898007 29 100.0 33 ............................. AGGACGATAGCCCAACGGTATTTTTTCAGCTGG 1897945 29 100.0 33 ............................. AGCCTGCAAAATAAAGTAGAAGCGTTCGGTATC 1897883 29 100.0 32 ............................. GACTTGCACGCTCAAACTGAATCAAATACGAG 1897822 29 100.0 33 ............................. ACTTAATTGCCATTGTGTTAGTCTCCTATTTGA 1897760 29 100.0 32 ............................. AACAAAGTGTCCTCTACAATCGCTAAAGTTGC 1897699 29 100.0 35 ............................. GCAAATATACCACTAGGTGTGTTGCCTGTTGGAGT 1897635 29 100.0 33 ............................. CAGATTCCTACTGAATCGACCGTGACGCCCTAA 1897573 29 100.0 32 ............................. AATTCAAGACATCCACTCCTATCCATGCTGTT 1897512 29 100.0 32 ............................. CCTAAGATAATGTTCTCGTCCAATGCGTTGGC 1897451 29 100.0 32 ............................. ATTTAAATAATTCAAGGCATCCGCTTCTATCC 1897390 29 100.0 32 ............................. GATGATGCAGTGAATGCAGTCGCAAGTTCAAT 1897329 29 96.6 33 ............................C AGAAAATAATATCGTTGTCAAATTATTCTGTAA 1897267 29 100.0 32 ............................. ACGGTACTTTCGAGGCAATTAGAAAAATTCAG 1897206 29 96.6 32 ............................C TAAGCTACTGACAACACAGGACTCGAACCTGC 1897145 29 100.0 32 ............................. AAAATGACCTCAGGACTAATACGAGGTTGAGA 1897084 29 100.0 32 ............................. ATGCCACAAGTGATGCGTAGTGAGTTGAATGA 1897023 29 96.6 32 ............................C GTTAAAAAAGTAACTCAAAAAGTCCGAGAAAA 1896962 29 100.0 32 ............................. AACAAAGTGTCGTCTACAATCGCTAAAGTTGC 1896901 29 100.0 32 ............................. AAAAACGGAACACGAGCAAAGGCTTTTGTCTT 1896840 29 100.0 32 ............................. GGTAGATAGGGCTATATCTGAATTGCAAGCTG 1896779 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= =================================== ================== 25 29 99.5 32 GTATTACCCGCACATGCGGGGGTGATCCT # Left flank : AGAGAGTGATCAAATTATTGAGATTGGTGCTGTTAAAGTTGAGGGAGAAATTAAGACCGAGTTTCAGATCTTGATATCTTATGAAAAACAGTTACCAAAAGAAATTAAAGAACTCACTGGTATAACCGATGATTTGCTTCTGAAAGAAGGTCAGGAAATAAAAATAGCAATGAAAAAATTTGCTAATTTTGTTAAAGACAGTCCATTAGTTGGATATAACGTTGATTTTGACAGAAATTTTATTCAAAGTACTAAAAATAAATACAATATTTCAAATTTTGATAAAAATCAGTTTATCGATTTGATGAAGTTTGTAAAGAAAGAAAAAATGTTTCTTGAAAATTACAAACTAAAAACATCATTAAAAGCATATGGAATTTTAGAAAATGTACCACATCGAGCATTAGAGGATACAAAGTTGATGGTTAATTTAGCAATGAAAGTGAATGGATTTCAAAAATTTTTGAAAAAAAGTCTTGATAAATAAAGGATCGATTAGT # Right flank : GATCCTGGAACTTTAACTGATGGTAATAGGACTAATTATATTTGTTTTTAAGAATAAGCTATTGTAACAGGGTTTGTAGCTATGAAATTTAATTGAAATTTTAAAACTAACCAAAAAACTAACCAAGCAATCAAAAAATCATTAGTTGAATAAAAAATAAAGTCTATCAGCGAGAAAAAACTGGTAGACTTTATTTTGTATTCAAAAGATGTTATTCATAGAAATAATCTGACTCATGGTAAGATGGTATTTGTTTTAATATGGTAAGTTTCTAATTATATGTTGTCTAGTGTTGCAGATGTCAAACCTAAGACGAATCCTGCTAAAAAGCAGTAATTCTCTAGTCAATTAATTCCATTTTTATTATTGAAAACGTTTTAAATAAAGTGTATAATTTAATTGTAACAATTTCTATATATTAAAAGTGATAGAAAGGAGAGTTGGATATTAGTTGTTTTACTGATATATATGTTTATCAATATTTGAACATTATTAGTTAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTACCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //