Array 1 10-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMML010000124.1 Lactonifactor longoviformis isolate MGYG-HGUT-02475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================== ================== 10 24 100.0 36 ........................ TAACTGCAGCCAGCCTGTTGCCATCGCTCCGTTACC 70 24 95.8 36 ......G................. GTCCTGGATCCAGCCCGTTGCCATGGCCCCGTCGTT 130 24 95.8 0 .........G.............. | ========== ====== ====== ====== ======================== ==================================== ================== 3 24 97.2 36 CTTCAGATAATACCAGGTCTTTCC # Left flank : TCCGCTGCTC # Right flank : CGTCCAACAGCCAGCCTGTCTTCATATACCCGTCATTATCAAAGTAATACCAAACTCCGCCGATGGACTGCCAGGTGTTCCTGCTCCAGCTGCCGTCCGCATTCTGATATCTCCAGCGGCTGCCCTCCTGCACCCAGTGGGGTGTTATCTTATCAATTCTGGAATCCTTAAATTCCTGAATGGCACCGCTCAGTTCTTTGATTGCTGTATCTACTGCGGATGCATCCACGGCAGATTTTGCCTTTTCTGCATTGCCTTTTGCCATGCTCTCATTGATAAGTCCTGCAGAGGCCATCCTTCTCTCAAAGCTGTCACCGGTTCTTCTTGCTTCCTGTTTAGCTTCCTCTGCCTCCTGCACAGGCTGCACGTCTTCGCTCTGATCCTCCGCTTCCGATTCCTCTCCGGCAGGGTCCGCCTGCGGCTCCTGCGGGTCAGTCTCCTCAGGCACTTCCTCCGGCAGGGGAGTGTCCTCCAGCATCTGTGCACTGGCAGCATTCTCT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAGATAATACCAGGTCTTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 21094-20863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMML010000004.1 Lactonifactor longoviformis isolate MGYG-HGUT-02475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 21093 32 96.9 34 N............................... TCATCTATTTTATCCCCCTAAGAGGTGTAAGTTT 21027 32 100.0 34 ................................ ATAAGGGACTTCTGGGATTTCTGTACCGTCTTAT 20961 32 96.9 35 ...................C............ TGCATGGCAGGGGCTTTGGTAGGCCTCCCCATAAC 20894 32 71.9 0 ...G.........T.......CCAT....GTA | ========== ====== ====== ====== ================================ =================================== ================== 4 32 91.4 35 GTCACTCCCCATGCGGGAGTGTGGATTGAAAT # Left flank : ACTCGTGGGCAAAATTCAGTGTTTGAATGTATTTTGGATAACACCCAATGTGTTACATTAAAAGCAATCCTATCAGAAATTATTGATGAAAATGTAGACAGCCTGCGGTTTTATTATCTGGGGAATAATTTTAAAAACAAGGTTGAACACATGGGTGTGGAGCGCGGAATTGATGTTGTTGATACATTAATATTTTAGTGCGAATGTAAAGTGAACATAAAAATCCCGGGGGATTCGCACCTCAAAAAGCAAGAGAATGTATTATAAAAGTAGACAAAATGAATGGCAGATGATATGCTGAGAAGATAAAAGTGTAGAAAATGTATATATGTTTTGTTGCGAATACTGATGTTTTGTGCACTTTTGCAGTCACTCCCCATGCGGGAGTGTGGATTGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTTTTTATTACGCCTGACAAATGGAAATCGGCAATTTTCCTGCCAGTGTGTAGTGGTATGCTCCGTTTACTGCCGGCTTCTGGGCTGTAGACTTTACAGATGGCAATGCAACTCTACTACTTTTTTAACTGCTTTATCTGCTTGATAGGGTAATCAGAGAAACTAAGGGAGAGAGGGCTTGTACTTAATTCATATATCCTAGATACACTAATTTACAGTTGAAGATAAAACGATAAAATGATAACATAGACAAGTAATATTTTCTCTTTCAAAAAGAGAAGCTAGGATTTTGCACCTCTATAGTTGGAGAAGTGACTCGCCAAATGCAAGAGCAAAGGCAATTGCCGGCGAATAGGAGTGGGTATTCCTTATTGACCAAAGGTCAATCCGCGCATTTATAGAAGTTTAGTCTTACGGTGCAAAAGTGACGAATTTGGAGTGAAGCAAGAGAAACGGCAGTTATCTTTAGAAAAAGAGGAGACAATGATACATAAAAATAT # Questionable array : NO Score: 8.43 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCATGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 234-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMML010000742.1 Lactonifactor longoviformis isolate MGYG-HGUT-02475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 233 31 100.0 37 ............................... TTCCGCTTGCCCGGTATTAAGTTAATCTCTTAACTTG 165 31 100.0 36 ............................... TTGGATTCAACCGATATCAATCACAGAATATCCTGG 98 31 100.0 36 ............................... TTTGAGACGGTTTAATACACTAGCTGCTTCATCCAG 31 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 100.0 37 TCACTGTCCGTGAGGGCAGTGTGGATTGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACTGTCCGTGAGGGCAGTGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //