Array 1 4179931-4177526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007731.1 Klebsiella pneumoniae subsp. pneumoniae KPNIH27 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4179930 29 100.0 32 ............................. CTTGAGCAAGGCGCTTTTTCTCCTGGGTGACA 4179869 29 100.0 32 ............................. TTCGGAAAGTTCTTTTTCAGCTGATCCGTAAC 4179808 29 100.0 31 ............................. GAAAGACGTTTTAAGTTATTGAAAAAAACCC 4179748 29 100.0 32 ............................. AAGAACCTTTCGATCGCTGCAATTATCTACGC 4179687 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 4179626 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 4179565 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGAAACCCCATAGC 4179504 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 4179443 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 4179382 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 4179321 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 4179260 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 4179199 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 4179138 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 4179077 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 4179016 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 4178955 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 4178894 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 4178833 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 4178772 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 4178711 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 4178650 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 4178588 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 4178527 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 4178466 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 4178405 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 4178344 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 4178283 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 4178222 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 4178161 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 4178100 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 4178039 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 4177978 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 4177917 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 4177856 29 100.0 32 ............................. ACCTACCAGATCCACACCGGGCGCTGCGAAGA 4177795 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 4177734 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 4177673 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 4177612 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 4177554 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //