Array 1 8944-9152 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000014.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 8944 24 100.0 38 ........................ ATTTTGGGCTCGGTCCGATCGGCGGTGCCGCCTCCTGA 9006 24 100.0 37 ........................ GAGTTGGTTCGGTGCGATCAGCCGTTCCTCTTACCGA 9067 24 95.8 38 .........A.............. ATTTTGGGCTCGGTCCGATCGGCGGTGCCGCTTACCGA 9129 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 4 24 99.0 38 TGGCCTCAAGCGCCGGCCGGGCTG # Left flank : CGGGGTGGGGCGGGCTACCTCCGCGAGGCTCGGTCGCGCCTCGTACGGGGCTCGCGTCCGCGGGGTACGCCTGGTTCGCCCTGGTCAGGCGGGGGCTCGCGTTCCGTGGGTGCGGGTACGCCTGGTCCGCCCCGGGCGGGGTTCGCGTGCCGCGCGTGCGGGTACGCCTATCTGCCCTGGTCAGGCGGGGCGGCGGGCCTCGTCCACGAGGAGGACGGGGATGCCGTCGCGGATCGGGTAAGCGAGGGCGCAGCCCTCGCCGGTGCACAGGAGTTCCGGGGTCGAGTCGGTCTTCGACTCCTCGAGGGGGGCGTGGCACGCCGGGCAGGCGAGGATTTCCAGGAGGCCGGCTTCGAGTGCCATGGGGGTTCCCTTCGGGGCGGTGAGGTGGGCTTGCGGCCCGCTTGATCAGAGCCTACCGGTGGGGAGGTGGGGTGTGGCTTCAGGTGTGGGTGCGTCTGCCTGGCGGCGGCCTCTGGTGCTGGGGGTGCCGTGTCGGG # Right flank : GGGATTGGTGTCCGTTGGAGCGGAAGGTGGCCGCCGAGCAGGGGCGGGGCCGTGGGCCCGGGGGCAGGGGGCCGGAGCGAAAGAGACGGGCGATGAGTTCGGGAGGGAGTAGGCCGTTGCTGGAATCGGAGCAGGGAGAGCGGGCCGTCTGTGCAGGACCAGCCAGGCGGGCCGTGGAAGCAGGGCCAGGACGGGGGACCCTGAACTCAGGGCCGGACCCTGAACGCAGAACTAGGGCCGAGTGGCCTTGAACGCAGGGACCAGGGGGCGAGTGGCCCTGAACGCAGGGACCAGGGGGCGAGTGGTCCTGAACTTAGGACCAGGAGGGGGGGGACGTATGGGTGGGGTCGTGTTGGTGCATGGGCTCTATCACCAGGCGGGGCATTTTGGGGTGGTGGCTGCGGGGTTGCGGCGGGTGGGGGTGGAGGTGGTGGTTCCGGAGTTGCATCGGGGGTCGTTGCGGGAGGACACGCGGGTGGTGCAGGAGGCGGTGGACGGGT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2010-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000027.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold19_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2009 29 96.6 32 ............................C ATGTCGTCCGTGACCTGAAGGATGCCCTTGGA 1948 29 96.6 32 ............................T CCGTTCGAGTCCGTGCTGCGGGACGGGGTGCG 1887 29 100.0 32 ............................. CCATACGCCCACTTGTGGCTGGTCCGCTTGAA 1826 29 100.0 32 ............................. GAGGCCCAGGAGGCTGAGCAGGCGGAGGTGGC 1765 29 100.0 32 ............................. GGCTGGAACATCTGATGGCCCCCGCCAAGACC 1704 29 96.6 32 ............................C CCGTTTACGGGTCGAGTTGAGCCGTGGGCAGC 1643 29 96.6 32 ............................C CGGGGGTCGTCGGTGGAGACGACGAGGCCGGT 1582 29 100.0 32 ............................. GCGGACAGCATCCGGGCCCTGCTCGGTGCGCG 1521 29 96.6 32 ............................C CCTCTCGTACCTCTCCCGCACGGCCGCCGCCA 1460 29 100.0 32 ............................. CCTTCGGTGTCGAACGGGTCGTCAGAGGTCGA 1399 29 96.6 32 ..G.......................... CGGCTGATCAGCTCCAGCTCAACACCGGGCTT 1338 29 100.0 32 ............................. GCGACGACGGTCCCAGGTCCGTAGCCCCGCCC 1277 29 100.0 32 ............................. CGCTGGGATGACGGTGACACGTCGTTCGCCAC 1216 29 96.6 32 ............................C CCCACGGCCGAGGCCGCCCAGCAGCTCACCGA 1155 29 100.0 32 ............................. CTGATCGGGGTACTCGTAGCCGAGGGCCACGG 1094 29 100.0 32 ............................. CGGGCGTTGCCGTCCACGCGGCCGTCGTTCGG 1033 29 100.0 33 ............................. CGCCAGGCCACCCGCGACGCGAACGCGACGGCG 971 29 96.6 32 ............................C ATCACCAGGGCGAGGGTGGGGCCCGAGACGAG 910 29 100.0 32 ............................. CTGGCGGGCGCGGGCGGCGCCGGTGCCGAATT 849 29 100.0 32 ............................. CCGTTACGAACCTGCGAAGTTCCAAGAGGGTC 788 29 100.0 32 ............................. GCGGCGAGGGCGGCGGCCGAATCCATCTCCGC 727 29 96.6 32 ............................T CACCGACGGGCAGACCTCCTATTACTCGGAGG 666 29 100.0 32 ............................. CGTCCGGCCGGGGGGTCCAGCTCTGCGAGTCG 605 29 93.1 32 T...........................C CACTTGGGCGCAGTCCGGTACCTACCTGGAAG 544 29 96.6 32 ............................C TTGTCCATGTCCCACATAGCGCCCTTGGCGCT 483 29 100.0 32 ............................. CCCCTCGCCCACGCCTACCGCACCGGCGCCCG 422 29 96.6 32 ............................T CCCCACGTCGGGCGGCGTGTGAGAACAGCTGC 361 29 96.6 31 ............................C GCCAGGTGGCCACCCAGTCGCCCGGCAGCCG C [336] 300 29 89.7 32 ..........T..C...A........... GAGTTCGCCGCGCGGGTCGGGTTCGGCCGACT 239 29 96.6 32 .............C............... ACCGCACTCGCCCGGTTCTCCACCCTGCTGAC 178 29 93.1 32 .............C..............C AGGCCGTCCCTGACCGAGGACCCTCTCTCTGA 117 29 89.7 0 .............C..T...........C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.5 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : GGGATGTTCCTGACCCCCTCATGAGTCTCGTCTTTGATGGGCTGTCGGCCACGCACCCGCGGGGATGCTCCCTCGACGTCGCCCTCGCCGTCCACGTCGGTGCGATCGGCCCCGCACCCGCGGGGATGCTCCGCACCGGTACGCGACGCCCGAGGCCGCCCGTCTATCGGCCCCGCACCCGCGGGGGTGCTCTGGGCGGCACCATCTCCATCCGCCTCGACGCCATGTCGGCCCCGCGCCCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGGCGGTCGGTTCACAACGGGAACGGACTGGGTGTCGGCCACGGGGGATGCTCCGGCGTGGGCCAGGACCACCGGGCCCCGGTCCTTGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6356-5351 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000027.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold19_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 6355 28 96.4 33 .........A.................. CCTGGGTGGGCGCGGTGACGAGCTGGGCGCCCG 6294 28 100.0 32 ............................ AGGGCCCGGACCCACCCCCGGTCCTCACCGAC 6233 28 100.0 33 ............................ CGCCGTGGTGAAGGCCCTCCAGGAGGCCGGAGG 6172 28 96.4 33 .................A.......... GCCATCAACAAGCAGATCAACGACCTCATCAAC 6111 28 100.0 32 ............................ CGGGTTACCGTCCCGTACGAGCTGCCCGCCCG T [6085] 6050 28 100.0 33 ............................ CTCATCAGGGCGCTGGATGCGGCGGGGGGCACG 5989 28 100.0 33 ............................ GGCGTCCTACGAGCTGGAGGCCGAGGGCTTCCT 5928 28 100.0 33 ............................ CGACGCTGCTGCCAACACCGCGGGCGACGTCTG 5867 28 96.4 33 ...T........................ CGACCGGTACTTGGGCGGCTGGCTGTACCTCAA 5806 28 100.0 33 ............................ GAGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 5745 28 92.9 35 ............TG.............. GCGACCACCACGGCCAGGCCGTTCGCCTCTTTACC 5682 28 96.4 11 .............G.............. GACCGCATCGT Deletion [5644] 5643 28 96.4 32 .............G.............. AGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 5582 28 96.4 33 ...........T................ CTTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 5521 28 96.4 30 .............G.............. GGGACCGGGGTGCTTCTGGGGGTACCGCGT 5463 28 100.0 57 ............................ CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 5378 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 17 28 97.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCTGCTGCCGGAAGTCCTTGTGCACTGGGACAGTGCCGGCAGACAACAGGCTTGGGCCCGCCCCTGGAACTCTTCGAGCAACGAGTCAGACATTGACCATCCCGACGTGCCCGCCCGACCGTTCTGGGCGACCGACGAAGGAGGCCACGACCAAGTCGGCTGCGTGTACACGGCCCAAGGCATGGAGTACGCCTACAACGTCGTCATCATCGGCGGGGACCTAGTGCGCCGTGGCGACCGCTGGGAAGCCCGGCCTGACGCCAGCGAGGACACCACACTCAAAAGCTTGGCGCCCGACCAGTACCTCCGGTACGCGCTCAACACCTACCGCGTCCTCGCAACCAGAGGCACCCGCGGGACCCGCTTCTATTCCACTGACGCCCCCACACAGAAATACCTGCGGAAATTGCTGCCATGTCATAAGCCTTGACTGCTTGGATGGCCGGGCCTCGACCTCGCATTCCGAGAGGCCGTTACGTACCTTGCGATATCGCTTATTC # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCGGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGTGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCATGCCGAGGTCCACGGCCGTGGCGGTGTCGAGTCGCCCGGCGCACCACACGCACTCGGTGCCCCGGAGCTGCCGCTCGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 113-995 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000001.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 113 28 100.0 33 ............................ GGCGGCGCGGCTCATGCCGAGTTCGGCGAGGAC 174 28 100.0 33 ............................ ACGGCGGTGGAACTTCTCGACGCGGTCGAGGAG 235 28 100.0 33 ............................ GGCGCCGTCCGGGTCGGGGAGATCCGGGCCGCC 296 28 100.0 33 ............................ GCCGTTACGAACTTGCGAAGATCCAGGAGGGCC 357 28 100.0 33 ............................ CATCTCCGTGAGTTCGCCGTACGTCGGCAGGTT 418 28 100.0 33 ............................ CCCGGACCAGCGCGACGGGTTCGCCATCGGCGA 479 28 100.0 33 ............................ CAGCTTCCGCGCGTCGGCCGGGCTGGGCTTGTG 540 28 100.0 33 ............................ GTCCGGGACGTACAGCGGCACGTCCAGCGGGTC 601 28 100.0 33 ............................ TGTGCACATCGTCGCCGTTTTCCAGGACTTCAA 662 28 100.0 33 ............................ GGTCGCGCCCCGGGACCGGGACGAGTGGGAGAC 723 28 100.0 33 ............................ CCCGCACGACGCGACGCCCGAAGCGCTGCGCGC A [735] 785 28 100.0 33 ............................ TGGACCCCGACATGATCACACAGGTCATCGAGC 846 28 92.9 33 ....A........G.............. GGCGATGCGGGCGGACCAGGCCCCGGCGGTCGC 907 28 92.9 33 .............G.........A.... AGGGTCAGGGAGGTTGGCGATGACGAACCGTCC 968 28 92.9 0 ...A.............A.......... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.6 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AACCTCGCCCTCACCGGATAAACCGGCGGTCCGCACAACGGCCTCCCCCATACCCGAGGCGACCCGAAGATCATTTGCGGGACAACCCTTACCGGTTCGCGGCCGTCGAGAAG # Right flank : CGAGCGCGGCGAGGGTCGGCCGGTGGAGAGTGCCGTCGCCCCCGCGTCGAGGTCCGCCCCTGGCACCGCCCTGACCGCAAGCACTGGGTCCTGGCCCGCCGAAGCATCGCAGAGCCGACGAAGATCGCCTACTACATCGCCTACGCGCCCGCCGGCGCCACACTGAACGAGCTCATCGCCGTCGCCGGTGCCCGCTGGGCGATCGAGGAGTGTTTCCAGACCGCAAAAGGACAGTGCGGCCTGGACGACTACCAGGTCCGCCGCTACCCGGGCTGGCACCGGCACATCACCCTGGCCATGGCCGCTCACGCCTACCTCACTGCCCTGCGGGCCCAGCACCTCGAAAAAGGGCCGGACCCGCTCGAACGCCAGTCCTGATCCCCCTCACCACCCCCGAGATCCGCCGACTGATCACCGGCCTCGCCCGCCTTGGCCACCACCCCGTCGGCCACCTCCTGCACTGGTCCCGCTGGCGACGTCGCCGCCAGCACCAGGCACGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 406939-407091 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000030.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 406939 24 100.0 41 ........................ TCTTGAACGGACGAGTCCGATCCGGACCTCGGCCCACAACC 407004 24 100.0 40 ........................ TCCTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 407068 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 100.0 41 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCGACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : ACCCCACCGCACCCCCGCCGGGGAGGGAAGACTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGAGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCAAGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACGGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 169-1230 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000018.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 169 28 100.0 33 ............................ GATGGTCGACCGGTTCGACGCCCGGGCCTCCGA 230 28 100.0 33 ............................ GGCGACCCTCACGGTGCCGGACGTGGTGGCGGA 291 28 100.0 33 ............................ GGACCGGTGGGAGGACGTCCTGGGCGTCGAGGA 352 28 100.0 33 ............................ GGAGCACTGCCGCGAGGGTCATGCGGAGCGGGA 413 27 96.4 33 .....................-...... GGCTATGACCTCCCCAAAGCTGAACTGGCCCGT 473 28 100.0 33 ............................ GAAGCGGGCCGCCTCGTGACGCAGCCGATGACG 534 28 100.0 33 ............................ GGAGACGCGGGGGGCGATGGAGTCCAGGTCGAT 595 28 100.0 33 ............................ GACCCTGACCGTCGCCGCCGCCGTCAACGGCGC 656 28 100.0 33 ............................ GGCCGAGGCCAACGCCGCCTCGGCCGCGATGAT 717 28 100.0 33 ............................ GCCGCAGCTCTCCGACCTGCGCGAGAGCGGGGC 778 28 92.9 33 ......GT.................... GACACCGCGCGAATGCGTTTCCGCCCTCGCTGA 839 28 100.0 33 ............................ GCCGGACAGGTCAATTTTCAATTCCCGGGGGAG 900 28 96.4 33 .......................A.... GCGCTATGCCGGTGCACCCGGGCCGCCGCGCCC 961 28 96.4 33 ....................C....... GTCGGTTTCGACGGTGGTGCGGTGCACGGCGAG 1022 28 100.0 33 ............................ GTCGTCGCCCGGGTCGAGCGGGAGGACGGCATC 1083 28 100.0 33 ............................ GACGTGCACGGCCCAGGCGACGGACGCGCGGTC 1144 27 96.4 33 .................-.......... GGTCAGCCTGGTAAAGCGGGCGGCGCCTGCCCG 1204 27 78.6 0 ...........A...A.-C.....GC.. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.6 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGTGGTTGGCGGGGGTGGGTTCGTGGATTGGGGGGGTGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGGTTGAGAGAGGGGGCGGTGATGAGCAAAGGGATGGCAAAGTCAGTCTGAAGGTGCAGGTGAGAAAGGG # Right flank : CCAGGAACCGATGCAAGGCCGGTGCGGCAGGCAAGTGATGCCCGCAGGCGCAAGGACTGCCCATTGCCGAACGAGTGACGTTCCCAGGTTGGCCGCTGATGTCCAGCCGCCGCAAATCCGGCGGCCAAATGGCAGCGCGAGTACTAGCCACCGCCCCCGACGCCCCTCTCCACCTCCCCCAAAGCCTCCCCCCACCCAAACCCAGCCGCATCCCCCCGCTTAGGCAAATGCGGCTCCCCCTCGGTGAAGACCACCCGCACCCCCTGCCCCCGCAAGGTCTCCACCGCCCGCCCCACCGCAGGCTGCGCCCCCAGCGCCGTGGACCAGAACGGCGCCGCGACCACCGGCACACCGAGATGTACGGCCTCGGCCGGCACCCCCAACGCCACCGTGTCCGTGATCCCGGCCGCCCACTTGCACGCGGACGTGGTGGTGAGCGGCGCGACGAGCATCGCGTCCGCCTTGGGCAGCCCGCCGGACTGGCCGGGCAGGGTGTACCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96632-96782 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000032.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96632 29 100.0 32 ............................. GAGGGGTACGCCATCACCGGGCGGCCGCCGGC 96693 29 100.0 32 ............................. CGGGCCAGGTGGGCGATGGCCTGCTCGACGTC 96754 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GTCGTGACCGACCGGATGAGCGCCCCGTACCTCGGCGGCGCCTCCATCGACTTCGTAGACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGTGCCGCTTTTTTTGCTGGCCGGGCCTCACTTGCCGGCCGGGCTGGTTTGGCCTCAAGCGCCGGCCGGGCTGATGGGGGTCGTGTTCGGGGCGCGGGCCGTCGGCCTGTGCGGTCACAGATGGCCTCAATCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGACGGTGGCCTCAACTGCCGGTGCTGCTGGGGGGCTGGGAGAGGATGGGCGGGGCTTCGGGCGCGACAGGGGAGGGTGTTTGCCGACTTTCAACCCAATTGCGGCATTCTCGCAAGCTTGCAGAAATAGGCTGAACTGCTAGGCAAAGCCGCAGGTCATCGAGG # Right flank : CCGTTCGAGGAGATCCGCTGTGGCCATCGTGTGGTGCTCCCCGCGTACGCAGGGGCCCCCGGAACCCAGGTCTCCCACCTGCTCAGTGCCACCGCTGGGCGCACCAGACGCCCCCAGCCCAGCGCCCCCCTCCCCTCAGAACGCCAAGATCGTGACCGTAGCCGCGTAGATCACGACCAACAGCGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGCAGGGTGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11785-11933 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLR01000017.1 Streptomyces albidoflavus strain CGMCC 4.1681 Scaffold7_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 11785 27 100.0 34 ........................... CCGCCTCCTCGTGCGGCTTGAGGTCCTTCCAGGT 11846 27 100.0 34 ........................... CCTACGGCCTCTCCGTCGCCCATGTGACGGCGGC 11907 27 96.3 0 ..........................T | ========== ====== ====== ====== =========================== ================================== ================== 3 27 98.8 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : CGATGAGCCTGCTCCGAGCAATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCACAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGCTTTGCCTGTCGCACGGGACTGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGGTGGGATTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGGGGATGGGGTTGGGACTTGGCGGGTGGGGTGGGGGGTTGGGTCGGGTGAGGCTGAGGAGTGGGGTCGGGGTGTGAGTGGCTGGAAGGGAGGGGTTCGTGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGGTCACCTTGGAGGGGATATGAGGCATTCGCCCACATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGGGTGAAACCCCAGGTCAGCGAGA # Right flank : TCCCTCCCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCTCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGTAGCGAGGCGTGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACTGTGATGACCGTGGCCGGGTGGGAGGCGAAGGCCAGCTCGGTCGCGGCCCGTGCCCCCGCGTCCAGGTGGGCCGTGGGCTCGTCCAGGAGGAGCAGGGGCGTAGGTGTCAGCCAAGCCCGGGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGCGGGGCCAGGGTGAAGGTGTCGATGGCTTCCGTGATGCGGGGGGTCGGGGCGTTGGGGGCGAGGTAGGTGAGGTTGTCGTGGAGAGGGGCCTCGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //