Array 1 1306384-1312587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRV010000001.1 Bifidobacterium sp. W8103 NODE_1_length_1733257_cov_346.833292, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1306384 29 96.6 32 ............................T GCAAGGCACATGCCAAGCGTGGTCAACAAAGA 1306445 29 96.6 32 ............................T TTGAGGACGGTTCTGGCGTTCTTCCATGCGTC 1306506 29 100.0 32 ............................. CCTGTGCGTGAGTTATTTACCACTATGTGCCC 1306567 29 100.0 32 ............................. CACCTAATCCTTTCACCACCAACCATACCACA 1306628 29 96.6 32 ............................G GAAAGGACGTGACAAATGGAAAGCATGTGGAT 1306689 29 100.0 32 ............................. CGGATATGTCGGCGCTTGGCTGTCAGGCACCA 1306750 29 96.6 32 ............................G GCTGCTCGGACGGCGTGCCTGTCGTGGCAGAA 1306811 29 100.0 32 ............................. CAGGAGGCGGAAGACAGACACGCAATCACCCG 1306872 29 96.6 32 ............................T CCGCCAGTCGTCTTCTCCCCCTGATACAATCC 1306933 29 100.0 32 ............................. GCGAGCTACCACTATGATGCAGCAGCCATCAG 1306994 29 100.0 32 ............................. CCTCTTTCAAAAAGAGTCATTTCTATGAAACG 1307055 29 96.6 32 ............................G TACTCAACAAGCCAAAGCTCAAGGCCGAGGAG 1307116 29 96.6 32 ............................A CGGTTCATGGTCTCTCCGAAGGCTTACGTGAG 1307177 29 96.6 32 ............................G GAGGAGGCGCGCGACCAGGCTATGGAGACGGG 1307238 29 96.6 32 ............................G CTCATAGGGATCCACTTTGATGCCGACGGCCG 1307299 29 100.0 32 ............................. CATGTCAAAAGCCCGGGAGACCACGTTTTGAG 1307360 29 100.0 32 ............................. TCAACTCATGCCTTTCTCGGAATCTATAAAAT 1307421 29 96.6 32 ............................T CAGTTGAGCAAGAGGCTCAACCAGAAAAGCGA 1307482 29 100.0 32 ............................. AGCCCAGACAGCAGCAAGCGCCACGCCAGCAG 1307543 29 96.6 32 ............................T GTGCAGACGCTGATGAGGATTTTCCCCAATCT 1307604 29 96.6 32 ............................G TTTCGGAAACACCATATCGGGTTTAGGCAAGA 1307665 29 96.6 32 ............................G GGCGGCAGATTGTACCCGGTGGGCCAGTAACC 1307726 29 96.6 32 ............................T TCGTCCGGCGTAATACGGATGGGCACTGGAAA 1307787 29 100.0 32 ............................. CGGCTGATCCAAACCTTAGAGCGTGCGGCAGT 1307848 29 100.0 32 ............................. TGCTAACCCTGCCCCGAGGAGCGCAGGTGACC 1307909 29 96.6 32 ............................T AAGGGGACCGCTGCCGCTAACTACGACTATCT 1307970 29 96.6 32 ............................T GACTACATGAGCACCACAGACTTTGCTTTACA 1308031 29 96.6 32 ............C................ GGCTGGAACGGTAATATCGATCTGAGCGTGGT 1308092 29 100.0 32 ............................. ACATCCAGAATGGTCAATATACGTCTTGTTGT 1308153 29 100.0 32 ............................. TCGACCGTCGACGGCACCGCCTGAGACACCCA 1308214 29 100.0 32 ............................. GCAGATCGCCAGATGGGTCAAGCAGACAACCG 1308275 29 100.0 32 ............................. TCTCCCGTGGCACGGGGGATACGGTCGCGGTC 1308336 29 96.6 32 ............................A TGTTCGCATTCATGCCGGAATTCTGCAATCTC 1308397 29 96.6 32 ............................T GTCAAGATAATTCAAACCATAATCGTCATTCT 1308458 29 100.0 32 ............................. CCTGCGCAAAGCCAAGCTCCCCCAGGTGCGCA 1308519 29 96.6 32 ............................T CCCCGGTCGGCGGCTTGGTTTTTGCGCAGGCC 1308580 29 100.0 32 ............................. GTGTCTGCGGCTCGGGTGGTGCTGTTCGATGG 1308641 29 96.6 32 ..............T.............. AGACGCTCAAAGACTCACGCCACACCAACAGC 1308702 29 100.0 32 ............................. CTCTACGCTCAGGTCACCCGGTATCCCGGTGG 1308763 29 100.0 32 ............................. TTCTAACCCGTTGCCCCGGCCATCCGGTCGGG 1308824 29 96.6 32 ............................T CATGGGCTTGCTCTGCTCACGCCGGCCCAGCA 1308885 29 96.6 32 ............................G GACCAGGACGCTTACCCGGTCCTCGCGACCAT 1308946 29 96.6 32 ............................T GTCACGACCACTGGTGCTGACGTGGTGGTAGC 1309007 29 100.0 32 ............................. GTTTTGTCATCTCTCGCGGGTCGAGTACAGTG 1309068 29 96.6 32 ............................T TTTGCGCCGTCGTTTCCGGCTTCGGTCTGCGC 1309129 29 96.6 32 ............................T CGGCGGAAGGACGCGGATATCTCGGCTTGTTC 1309190 29 96.6 32 ............................G CCCACCAGGCCGTCGGGCGTGGAAAACAGGCC 1309251 29 82.8 33 ...........GGAT.............A CGGGCTCAACACCACCCACGCGCGGACCCGTGA 1309313 29 96.6 32 ............................T CAGACGGGGCCATCCTTTGTTTATCAGTATGC 1309374 29 96.6 32 ............................G GAAAAGTGGATGGACGATATCCTATTTGAATT 1309435 29 96.6 32 ............................G TGTTCCCCGACAATCTAAGATTCCTGAGCAAT 1309496 29 100.0 32 ............................. ATAGCCTTTAGGCGGGCCAGCCGTCTGGCCGA 1309557 29 93.1 32 .................A..........T CTCATCATCGCTCTTGTTCTGCCACTGGGCAA 1309618 29 100.0 32 ............................. GGATCAAACGAGATGGGCCTGAACACGTCCTC 1309679 29 100.0 32 ............................. CTCTGATACATCCTGACGCGCGTTGTCTGCTG 1309740 29 96.6 32 ............................T CCGTGGCGCAAAGACCGACAGACCGGCGATAC 1309801 29 100.0 32 ............................. GGCATGGAAGCCCTCCTGCCTGGCCGAGGGGA 1309862 29 96.6 32 ..............T.............. GTCTGTGAGAAACGATGGATGATCCGTCCCCA 1309923 29 100.0 32 ............................. CCATCCCGCAGAATGCCTACGATCATTATCAA 1309984 29 100.0 32 ............................. TGCACCATCTTCAACCCCATCCAGTCCTTGCA 1310045 29 100.0 32 ............................. ACGCTCATGGCCTCCGTGTTGGCGGACAGGGG 1310106 29 96.6 32 .....................C....... AGCCGCCGCCAGCAGGGCCAAAGCCTGCAGAT 1310167 29 100.0 32 ............................. GGGATGTACTCAAGCATTTTAAGGGACGAATT 1310228 29 96.6 32 ............................T GATCTTCAAGACGTTCTGAAGTCTGCAAGACG 1310289 29 100.0 32 ............................. ATCATCTTGGTGCCGAGGCCGGTCTGATCCAT 1310350 29 100.0 32 ............................. GGAACAACACGATGCACGCCTGGGCCAGCGCT 1310411 29 96.6 32 ............................G TCACTCTTGAGCAGATCGGACCGCTGTGCATC 1310472 29 96.6 32 ............................T GACCTCGCACCACTCGGTGTCACCAGTGTGCT 1310533 29 100.0 32 ............................. CACTATGGAAAGGATGAAGATGATGAATAGTG 1310594 29 96.6 32 ............................T CACCCTGACGAGGACAGCCTGCCGGAGCCTTA 1310655 29 100.0 32 ............................. TACTGGGTCCATTTGACCAAGTGGTACCCAAC 1310716 29 100.0 32 ............................. CCGGTGACGAGCTGGCATCGGTCATGAGAGTG 1310777 29 100.0 32 ............................. AATTGGCACGGGCCACATGTAGACCCGATATT 1310838 29 96.6 32 ............................T CAGTGGCCGACTGCCGGCTTTGCGGTCCATGG 1310899 29 96.6 32 ............................G TCATCCGGGACTTATCCGACATCAGGGTGGCC 1310960 29 96.6 32 ............................T GCCTCTCCCAATGGGCTTTTGCATATGCGTCG 1311021 29 96.6 32 ............................T CTGCCGGATGGTGGGTCCAGAAAGTCGTTGGT 1311082 29 100.0 32 ............................. CGTGTTGAGCTGCTTGTCGTCGCCCACCAGGA 1311143 29 100.0 33 ............................. GGGCCTCTTGGCAGGTCCTCGCAGATCGGGCAG 1311205 29 100.0 32 ............................. CGTTGCATGATTTCCTGCGTCGAGGAGCAATG 1311266 29 96.6 33 ............................T CCCAGTCACCGTTCTTCAGGGCGATGGTGTACA 1311328 29 96.6 32 ............................A TCGTCTCTGGGCATGTCTTCATACCACTGTTT 1311389 29 93.1 32 ...T........................A CGCACGGTCCGCCTTGTTCGAAGCAGCGTCGG 1311450 29 96.6 32 ............................G GCTCCAGGGCGATATCACCGGACTTGGTGCCA 1311511 29 100.0 32 ............................. GAGTACCTGCACGCCCTGCAGGACCTGGGCAT 1311572 29 100.0 32 ............................. GGGGTAGATCGCAAGTATGTAGACCGGCTGAA 1311633 29 96.6 32 ............................T GGACGGCTGCACTTTTCAGCTTTGCCTGCTCG 1311694 29 100.0 32 ............................. AACGAGACATTCGGCCCATACCCCATCACCAC 1311755 29 96.6 32 ............................T GGTGCGGACTGGCCCGGCATCCCATTCGTCTC 1311816 29 100.0 32 ............................. CCGACAATACGATCGTACGATGAACAGACTTT 1311877 29 100.0 32 ............................. CGGCAGATGGAGAAGCTGAAACTCGGGTCTTC 1311938 29 96.6 32 ..................A.......... TGGGCCAGCGCCCACTCCAGGGTCATGCCCGA 1311999 29 96.6 32 ............................T TGTCGGGCGATGAAACCAGTCGGGTGAAAGTC 1312060 29 93.1 32 .................T..........T ATGGGAGGCTTTCACCTCTTTTCTCAGCTCAT 1312121 29 100.0 31 ............................. TGCTCCTGTCCGCCGCCGGCCATCTGGTCCG T [1312146] 1312182 29 100.0 32 ............................. CTGTACAATGCCGAAATCGAAGTCATCGTATG 1312243 29 96.6 32 ............................T GACTCGAAGGCTGCCAAGGCCGGAGCCGACCA 1312304 29 96.6 32 ............................T TTTGCAATCTGTGATGGTTTGCGGGTCTCAGG 1312365 29 96.6 32 ............................T GAACCAGCTTTCGTTTGCCGCCACCCGATACA 1312426 29 96.6 32 ............................G CTCTGGGTGGAGGGGTCGAACGGCATGGCCTG 1312487 29 100.0 43 ............................. AAGCAGTGGACCGTGGCTTCTTAAGAGTATACAAATACTATCG 1312559 29 86.2 0 ...T....T.........A.......T.. | ========== ====== ====== ====== ============================= =========================================== ================== 102 29 97.8 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : TGGCCACGTCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGTATCACAGGGCAGATCCGAACGGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGAAGGCGGCGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGAACTGGTTGGAGCAATGCAAGCAAGTACAGACGAGTGGCAAAGTTCCGGCGCTCGCGATCCAACTGAGTCCAAGCGGGACTCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCTGTGTAGATGGTCTGAATCGCAGTGGCTGGGACGGGGAATGGAAGGGGCTCGAAATGCAAACTCATTAAAAATCAGAGATTTAGTCTATTATATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : CACAGGCTATCGGATGGATGCCCTGCAGGTTCACAAATATGAGAGGAGACGAATGACTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTACTCATGACCATATTCCTGATGACCGGATCAACAGTCACGCGTCATGCTATCCCATCACTGATGATATGGATGAAACCGAACGCCGGGTCTGGGATTTGCTGGATGACGAGGACAGGAAAATGATTCAGTCGGATCGTACATACTATGGGACAAACTATGGTGCTGGCTTCGGCGGCAATAGCAAGGTGAGTTTCTACGATGTGCTCGGCATCAGGCAGTTCGACTGATTCATCCCGGGCTTCCACATGTTGCTGCAATCATCAAAAGAATCACTATAGGAGCGCCGGGAAGAATCCATGACCGCTTCATAGTTCGAACATGAGTGTTTGATTCTCTTTAAGTCCCAGTAATCGCATTGGTGTGCCCTGATTGAAGGTTCTGTCTGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //