Array 1 23701-13643 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOE01000032.1 Loigolactobacillus zhaoyuanensis strain 187-3 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23700 36 100.0 30 .................................... CATAAGTGTCCGGTAGTGGCTCATTAATCG 23634 36 100.0 30 .................................... GCAGCGAAGCCAAACCGCTCCGCATAATAA 23568 36 100.0 30 .................................... TTGCAAACAAAAGGTCTCAGGCAAATAAAG 23502 36 100.0 30 .................................... AGCAGTAACCACTTCACCATGACCATCCAA 23436 36 100.0 30 .................................... TCATCAGCGTAAAGTTCGTCAACATCATCT 23370 36 100.0 30 .................................... GCAGCAAGTAACCAAGCGGAGCCCAACCGC 23304 36 100.0 30 .................................... GGTCGGCTGTTGCTTTGACTGTTCTTCCGT 23238 36 100.0 30 .................................... TTCAATTTCTTCAAGGGCGAACTGATTTTG 23172 36 100.0 30 .................................... GCAAAGACGCGTTGGGTACAGCGATCATTA 23106 36 100.0 30 .................................... TATCAGTACCACAAGTCTTGCTGCAGCTTA 23040 36 100.0 29 .................................... AGCATCAAGCGAGCCTACAGCGAGGTCGA 22975 36 100.0 30 .................................... AGCAGATTCACACATTGCATTGTCAGATGG 22909 36 100.0 30 .................................... TAGCACACCTTCTTCTAGTTCTTGATTAGG 22843 36 100.0 30 .................................... TTCATGAAGTCGTCAGACTTGATTTTCCCG 22777 36 100.0 30 .................................... GCTATAACTGTCGAACCGTTCCCATTGGGT 22711 36 100.0 30 .................................... CACATCGTACTACGACAAGTACAAGCGCGA 22645 36 100.0 30 .................................... CATGAACAGTTTTACCTTGAACAATTTGAG 22579 36 100.0 30 .................................... GTGCTGGTGCTGGTGTGAACGTCTTATCAT 22513 36 100.0 30 .................................... CAAGAGAGATGTTACCAGCTCAGTCACCAA 22447 36 100.0 30 .................................... AGGCCAGACTTGTTCGTGGAGCACGTTATT 22381 36 100.0 30 .................................... GGGCGCGCCACTCATTCGACGGTCACCTAT 22315 36 100.0 30 .................................... GTCATCTGGCCTTCGCCGTCGTAAGTGACA 22249 36 100.0 30 .................................... GACTAGTTGTGTCATATAAATAAATTGCTT 22183 36 100.0 30 .................................... CCGACTATAGCGACAACAAATCCCGCCAGT 22117 36 100.0 30 .................................... GTGCCGATACCATTTCAGCCAAGTAGTGGT 22051 36 100.0 30 .................................... GTCATCTGGCCTTCGCCGTCGTAAGTGACA 21985 36 100.0 30 .................................... GCTTAGTTACAGGCATTTCACCGCCACCCT 21919 36 100.0 30 .................................... AATGCCTGGCTGCTTACCATCTCTAGTCAC 21853 36 100.0 30 .................................... TCATTTTACCTAGTGACTTATCTGCGGCAG 21787 36 100.0 30 .................................... GACTAGTTGTGTCATATAAATAAATTGCTT 21721 36 100.0 30 .................................... CGTCAATCCCCGATAGATTGCCTGAGCTGT 21655 36 100.0 30 .................................... GTTGAACATCGTTAACGCGGCTTTTGCTGT 21589 36 100.0 30 .................................... CATCGATTACAACAAGGAACAGTTGGAAGT 21523 36 100.0 30 .................................... AGAATCCGCCCTAACTCTTCTGCTGGATAA 21457 36 100.0 30 .................................... GGGCGCGCCACTCATTCGACGGTCACCTAT 21391 36 100.0 30 .................................... TTATAGAGAACTGTCAAATCAAAGTTTTCA 21325 36 100.0 30 .................................... TTGGTACGCGTTACAGTTTCGTGGTGTGTC 21259 36 100.0 30 .................................... TCTCAGTATCACCTTGCTTGATTTGCTGAG 21193 36 100.0 30 .................................... CGCTAAATCTAAAGCTGGTTTTGAACGGCT 21127 36 100.0 30 .................................... TAACCCCCATAACTGCGTTGAACGCCGCCA 21061 36 100.0 30 .................................... TTGGAAATATGAGGCTAAATCTGACTCCAC 20995 36 100.0 30 .................................... CGATGGCATCAATTGATGACGCTATCCAAG 20929 36 100.0 30 .................................... ACCGCTTGTGTTGCCACATGTGACGAGTGG 20863 36 100.0 30 .................................... ATCAGAAATGGATTCTGACTTGGTTGCGAT 20797 36 100.0 30 .................................... TTATAGAAGCGTAATTAATTAGTTAAGTTT 20731 36 100.0 30 .................................... TAGCATCAGCAGTTCCGAAACAATTGTCTG 20665 36 100.0 30 .................................... GTACAGCAATCTATCCTAGTGATGGATTTT 20599 36 100.0 30 .................................... ATTGCCACGTCGTCTTGATTGCGTCAAATA 20533 36 100.0 30 .................................... AAAAACGTATCTGCTGAGAACCATTTGAGA 20467 36 100.0 30 .................................... CTTAGACAATAGGTCTACGGCCGTTGTTAC 20401 36 100.0 30 .................................... TATTGCATACATTGACAATGCTGAAAAGAT 20335 36 100.0 30 .................................... ATCAATGATGATGAGACGGCATTCAAGGTT 20269 36 100.0 30 .................................... TATCGCCGTTGTTAAGATATAGCTTTCTCA 20203 36 100.0 30 .................................... TCGTAAGCACGCCCATAGCGTGTCATGTCA 20137 36 100.0 30 .................................... TTTATTTTGCCTCCTTAGACTTAAACAGTG 20071 36 100.0 30 .................................... AGTTCTACGTTGAGGGTACAGTGGTTCATA 20005 36 100.0 30 .................................... CGGCCATTGCTGAACACCTTGTCTACTGCC 19939 36 100.0 30 .................................... GTAGCGGTTGTTATGGCGATGAACAGGTTT 19873 36 100.0 30 .................................... TCCAACAGCCGGTGAGTTCATGGCAATCGA 19807 36 100.0 30 .................................... GATGGTCGTTGGTTTGAATCAGGATTGCCC 19741 36 100.0 30 .................................... CAATCACTTGTTTTTCTTCTTCAGCGGTTA 19675 36 100.0 30 .................................... ATTTGTTCCTGGCAACAGATTCCGCACGTA 19609 36 100.0 30 .................................... ACATTGTGGGTTTTTTATTTGTCATTGATG 19543 36 100.0 30 .................................... TCTACGTCGTCATGGGTGGCGTTAAATGGA 19477 36 100.0 30 .................................... TTTGACTTGTTGTCATAATTAACCCCCTAT 19411 36 100.0 30 .................................... ATCGCTAACATAGTCCGTATCAATAACACC 19345 36 100.0 30 .................................... AGGCCAGACTTGTTCGTGGAGCACGTTATT 19279 36 100.0 30 .................................... AGATCATCAGTCCTTAACCTCCAATTTAAC 19213 36 100.0 30 .................................... ACCAACAATCGTCCGCATTGGGAAACCAGC 19147 36 100.0 30 .................................... ACGCCATCTGTGTAGACACCGTTGACCATA 19081 36 100.0 30 .................................... TATCCGTACCGCTAGTACCCTTATCATACT 19015 36 100.0 30 .................................... AATTAGAGTTCACTTGATTAGCGGTCGTCA 18949 36 100.0 30 .................................... CTGCTGGAACAACTGGAACTAAAATACCGT 18883 36 100.0 30 .................................... CTTTGATTCCAAAGAGATGGCTATGGCAAT 18817 36 100.0 30 .................................... ATTAAAACATCTAATGATATTTATCAATTA 18751 36 100.0 30 .................................... GTGGCTTGCGTGCTGGTTCAGCCACTTTGG 18685 36 100.0 30 .................................... GCTCAGATTGAAGCTACCGTTACACAATCG 18619 36 100.0 30 .................................... AGGACAGTATGAACTATTAGGAATTTACAA 18553 36 100.0 30 .................................... TTGGTCGTGTGTGGGTTCCGATTGAATTTC 18487 36 100.0 30 .................................... CTTCAGCCGCGGTTCAAGATTATGCGGATA 18421 36 100.0 30 .................................... CAGCATTAGCCGTGACGTCATTGGTAAGTT 18355 36 100.0 30 .................................... TTCAAAGTACTCCAAGTGCCGCCGGCTTCA 18289 36 100.0 30 .................................... TCCTACCCCTTTATATATATTTATATATTT 18223 36 100.0 30 .................................... GCCAGTTGCCGAAGTAACATCCTGCTGCAT 18157 36 100.0 30 .................................... CCGTTCTATGCGGATGATACCGATTTTTAT 18091 36 100.0 30 .................................... CTTACACTGGTAATTTCCGTGAAGCTATGG 18025 36 100.0 30 .................................... AGCAATGTAAGTAGACGTGAACTGAGCAAT 17959 36 100.0 30 .................................... GGATATGGAAGACGTCACAACCCACCTTTC 17893 36 100.0 30 .................................... TATGAGCTCGGTGATGTGTCGAATATGACC 17827 36 100.0 30 .................................... TAAGGAGGATAAACATGGCAACACTATACG 17761 36 100.0 30 .................................... AAGATAAATAGTCTGTACTCAAAATGCCAT 17695 36 100.0 30 .................................... AGCAATGTAAGTAGACGTGAACTGAGCAAT 17629 36 100.0 30 .................................... GGATATGGAAGACGTCACAACCCACCTTTC 17563 36 100.0 30 .................................... TGTGCATAGGCACTAACTTCCGCGGAGGTT 17497 36 100.0 30 .................................... GTTGTTGACCAACGTAGATCAGATTATAAT 17431 36 100.0 30 .................................... GTGCTGGACTACGCTAATGAACATTTAGAC 17365 36 100.0 30 .................................... TCCGACAGCCGGCGAGTTCATGGCAATCGA 17299 36 100.0 30 .................................... CGTGGTGAGATCAACGATCCTGATGGCTAT 17233 36 100.0 30 .................................... AGTGGTTCATCTGTTATTGCCACTAACACT 17167 36 100.0 30 .................................... AGCAAAGGCGCTTGAAACGGCTAAGGCCAA 17101 36 100.0 30 .................................... ATCGCAACTGCCGTTGAGTATACATAGGCG 17035 36 100.0 30 .................................... TGGTTCTTCGTGTTTTACTTTTTTTAAGTT 16969 36 100.0 30 .................................... ATAACCAAATGTTTTATCTCCCTTAATATC 16903 36 100.0 30 .................................... AGTTCGTTATTCGTGATGCTACCTTTACCT 16837 36 100.0 30 .................................... ATTGGACTGATGGCTAACAGTGGTCTTGAT 16771 36 100.0 30 .................................... CAGGACCTTATAGCACTTGATGACAATGAA 16705 36 100.0 30 .................................... TTAACGATTTGCCTAAGCCTGATTTAATCA 16639 36 100.0 30 .................................... CATTGATTGCTTTTCTTTAGGTGTGTCGTG 16573 36 100.0 30 .................................... TGATGATGAGTAAACACATGGGCAAGAATC 16507 36 100.0 30 .................................... ATAAATACATTGATCGATCACCGTACAAGG 16441 36 100.0 30 .................................... TTGTTACTGGTGCCCAGTCCATGTGGAAAA 16375 36 100.0 30 .................................... TTCATCGGCAATGCTTTAAGCTCCAAAATC 16309 36 97.2 21 ...................................A CTGGTGATACATTGGTTGAAA Deletion [16253] 16252 36 100.0 30 .................................... GTGTAACTTGATAAAAGACTTGTGGATCAT 16186 36 100.0 30 .................................... ATCACTTAATTTGCGCATTGACGAGCTGTC 16120 36 100.0 30 .................................... ACTATAGAATAAGCCCTGCTTCTACCGCCA 16054 36 100.0 30 .................................... GCAGTAACGTATGCACGAACTGGGACAACG 15988 36 100.0 30 .................................... TGACCAGATTACACAGGTGAACGACCTGGA 15922 36 100.0 30 .................................... GCGATTGCACCGCTATATTTGGGAAAAGTA 15856 36 100.0 30 .................................... CTTCCAGTTGTTCAATTGTGGTGATATAGC 15790 36 100.0 30 .................................... CACGTTTGCCATTTTGTGTCGTCATACGAG 15724 36 100.0 30 .................................... TTGTTTGGCTGATACCACTCTCTTTCGCTA 15658 36 100.0 30 .................................... GGTACAATGATCGGGACTACTTGTACAACA 15592 36 100.0 30 .................................... TGACGCCACGACACTTTACAGCACAGTCAC 15526 36 100.0 30 .................................... TTATGAACTCGACGATAATCGGTCTGTAGA 15460 36 100.0 30 .................................... AGCGTGCAGCATGTTGGCTTTTTATAGTTG 15394 36 100.0 30 .................................... TGGTATTGCTACGATAACGACACAAAGCAC 15328 36 100.0 30 .................................... TAAGTGTGATGCTAACAGCGTCAATGCCAA 15262 36 100.0 30 .................................... TCTGGCAAGCCGAACTCGTCCATAATTGGT 15196 36 100.0 30 .................................... CGGTTCACTCAAAACATCAGTCATTGATCA 15130 36 100.0 30 .................................... CATTCTGGTGGCTAACTGTTATCGCGGCTA 15064 36 100.0 30 .................................... GAGTAGACCACTTTGGAAGAAATATTTAAA 14998 36 100.0 30 .................................... CCGCAATTATTGCTGGTTCAAGCACGAAAA 14932 36 100.0 30 .................................... CTAGGTCGGGTTGTTAATTTTTAAAGTAGC 14866 36 100.0 30 .................................... TGCCCCTTGTTGCCAACATATGGCAGTCCA 14800 36 100.0 30 .................................... GATATATTATCGAATACCACTAGATCACAC 14734 36 100.0 30 .................................... AAAGGCAGTCGTGGATCGCGCAAGTCGTTC 14668 36 100.0 30 .................................... CGACAGAGACGCGCGAGACGGTCACTTGCC 14602 36 100.0 30 .................................... AGCCGCCGTTTGCATAACCGTGACCATTAC 14536 36 100.0 30 .................................... CAGAGGTTGTTGTGTCGATTAAAGTCGATA 14470 36 100.0 30 .................................... CGTCATAAGCGTATCTTGTCCCTGGATCGT 14404 36 100.0 30 .................................... TGGATCCAGGTGTAGTTGCCAATCTTAGCC 14338 36 100.0 30 .................................... CGCAGAAGCACGGGCTTTTATCCAAGAATA 14272 36 100.0 30 .................................... CAAGTTTTTGCGGCGCATAATATGTGAACG 14206 36 100.0 30 .................................... CAGAAGTTCCGTAAGTAATTTTAAGCTTGG 14140 36 100.0 30 .................................... ATTACCACCTACAGCATTGGGATTTCCACC 14074 36 100.0 30 .................................... CTGAACTATAACTGCCATCTGCATCGGCTC 14008 36 100.0 30 .................................... GCTTAAACTTGGAGCTGTCGCATTAGCGGC 13942 36 100.0 30 .................................... TTGGCAGTATTCCAGCAAAATGCAGTTTAA 13876 36 100.0 30 .................................... CGTGGCAATGTCTATGACCTGGTCAATATA 13810 36 100.0 30 .................................... TCGCGATCCTGCCACACGCTACGCTTTTAA 13744 36 97.2 30 ..................G................. TATCGCAGTCAGTTTTCAATGTTTATCCAA 13678 35 77.8 0 ............T.....T..A...T..A-....CT | T [13654] ========== ====== ====== ====== ==================================== ============================== ================== 153 36 99.8 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : ATGAATTCCATTCGTTGAGTAATGCGGTTCATAAATCAGTCTCATCGTACACCACTTGTTGTCGTAATAACTCTGCTGCGGGATTAAAGTTGCCGGAACTTATCCCGTTAGTGGCGCACGAGTATGAGTAGTAAATATATGCGCTTATTAGTTATGTTTGATTTACCAGTGGTAAAGGCAAAGGATCGGCGTGCAGCAGCAAAATTCCGGCAGTATTTATTAGGTGAAGGGTACGTAATGATGCAATATTCGGTTTATTATCGCATCGTTAACGGCTATGATATGTCAAAAAAATACGAGCTGCGGCTAGATGATAATTTGCCCGAAAAAGGGTCAGTGAGATTATTGGTTATAACAGAGAAACAATTCGATGAAATGCGTCTGTTAGTAGGCGACCCGCTGCCTAATGAAGAAAAAGTTGATAGCGGCCAAATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATCGGGCTCTTTTGGTGCACTAG # Right flank : AGTGAGCACAGGAGTAGTCTATTGGATAATGCAGTTTTGGCTAAATTTATTGTGTCTTTAGGTAGTTTAAATAATTATGGTAGTACAGTTCTGCAAACGAAACAGGCGCTAGACCTGATGTCTGATCGGCCATTAAATCAGGGTAGTGTGGATGTTATAATTTTTAATGTGGACGGTATTATCGCTGTTAATCGGCAATTTAATACTGAATCGGATGAGCAGCCAAATTGACCGGGATATTTGCGTAATGCGTATTAATGAAGATGATTGGATTGGTGTTACAGTTGATAAGAATAGTAATACTAACTATATTCCACCAGAAATCGTTACGCGTCAGAATATACAAAATATTGTAGATCAATATAACCATTCGCAAAAAGCAGCAGCTGATGCCTGGCGTATTTTTACTGCGCTTTCTAAAGTACAACCATTTCAAGATGGCAATAAATGAACAGCACTAATTGCAGCTAATACAGCTTATAATACTTTTGAAAAAGAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //