Array 1 339-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLD01000256.1 Myxococcus sp. AB022 NODE_257_length_385_cov_60.124_ID_5747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 338 37 100.0 34 ..................................... ATGTCGCTCGACATGAAGGAGTTGTCGGGCTTCA 267 37 100.0 32 ..................................... CCCGCGTACCCGCGTGATGCGGGCGGCGAGCG 198 37 89.2 34 ...........C.TT.A.................... GTCTCCGCGGAGCTCTCCGCGTCGCCCTGACGTC 127 37 91.9 33 .........T..T.......................G CTTGCTTGGATGGAGCAGGTAGAACTGACTACC 57 37 89.2 0 ........G.A.....T..G................. | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 94.1 34 GTCGCTCCTCGTGAACGCGAGGAGCGTGGGTTGAAAC # Left flank : GCGTGGGTTGAAACACGCAGAAGCGCGAGCCCGTCTACGACGCGCT # Right flank : CGCCCACGACGTCGTGGGTGG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64605-60024 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLD01000010.1 Myxococcus sp. AB022 NODE_10_length_148100_cov_76.2926_ID_5253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 64604 37 100.0 32 ..................................... CCAGGTGCGGCAGACGCTGGCCCCGTTCGATC 64535 37 100.0 35 ..................................... CTCATGCTCGACGACTCGCACGAAACGCGTAGTCA 64463 37 100.0 33 ..................................... GTGACCGGCAGCAACACCATTACCTTCCGGGTT 64393 37 100.0 33 ..................................... GATGCCTCTGGAGCAGCTGGTGGATCGCTCGAA 64323 37 100.0 32 ..................................... GCGGCCTGAGCGCCTCTTCTCCTGGGGGCTGT 64254 37 100.0 33 ..................................... GGCGTGAACCTGGAATGGGCGTACCGCGCCGAC 64184 37 100.0 32 ..................................... ACGGGCAAACTCCTCGATTCTGAGGACTTTTG 64115 37 100.0 33 ..................................... CTCGCTTGAGGACCCGGAGATTTGGCTGCCGAA 64045 37 100.0 32 ..................................... CCGCATCCACCCAGCGCCTTGTCACAGACGGA 63976 37 100.0 36 ..................................... TCTGACGGCTGGACGGACGAGCGCGTGGAGCTCGTG 63903 37 100.0 33 ..................................... CCATTCAACGCGCCCGACGCATGGTGGTGCGTC 63833 37 100.0 35 ..................................... CTCTGGTGAGTGGCGGCTGTCTGACGCGTCATCTG 63761 37 100.0 34 ..................................... TCTGCTTCGTCGCGTTGCCAGCGGAGCACTGGCC 63690 37 100.0 33 ..................................... AGTTGCCGTCGCTGTCTGGCTCGCCTGCGCAGG 63620 37 100.0 33 ..................................... AGCCCCGGCACCCGCGCGGCCTGGGCGGCGATG 63550 37 100.0 35 ..................................... CGGTGAACACCACCTCGCCGCTGGCTGCGACGATG 63478 37 100.0 36 ..................................... ATGACAAGGCGCTGGCGCCACGTGCTCCATGGCGAG 63405 37 100.0 32 ..................................... TCACTGCCGGGCCCGCCCTACTCCAGCGGCCC 63336 37 100.0 36 ..................................... AACCAGGCGCTCACGTGAGCGCCGCATCCAAGGAGA 63263 37 100.0 35 ..................................... GATGAACCTCTCGCCGGGCCGCTCCATAACGGCGA 63191 37 100.0 35 ..................................... TCTTCGCGCTTGGCCTGGTCGGTCTTGGGCAGCCA 63119 37 100.0 34 ..................................... CATCCGCGCAACGGACGTCTGGAACTCGTCGAAA 63048 37 100.0 32 ..................................... TCTCCACTGCTGACACTCACCACGAGCGCCCG 62979 37 100.0 35 ..................................... GCTTGCGGCCCCCGGGCTCCTTTTTCCACCCCCAC 62907 37 100.0 34 ..................................... GACTCGCCCACCTCACCCCGACACCCGCACAAGA 62836 37 100.0 34 ..................................... AGGCGCTCAAGCGGGGCGTGAAGAAGCACGGGAA 62765 37 100.0 33 ..................................... TACAGCGGGGTGTGCTCTTCGCACGGCGAGGCG 62695 37 100.0 34 ..................................... CGCCCGGCTCCCCAATCTGCGGTCGACCCTCGGT 62624 37 100.0 35 ..................................... ACGTCAGGCGAGAAGATGAGGTCCAGCGGCAGGTC 62552 37 100.0 34 ..................................... GTGGACACGGGCCCCGCGGTCAATCCCGATGCGC 62481 37 100.0 35 ..................................... GGTGATGGCGTCGGGGACGAGATTTGCAGCCTGGG 62409 37 100.0 33 ..................................... AGCCCGATGCCGCGCGACTACGCTGGGCCCGGT 62339 37 100.0 35 ..................................... CACTACGCCCCGCCCGGCAGTGCCTGACGCGCCTG 62267 37 100.0 34 ..................................... GCGCTCCAGGCTGACGGGTGGTGGCTCCGCTCGG 62196 37 100.0 33 ..................................... TCCAACCGCCGGAACAACGCGAAGTCGGACGCG 62126 37 100.0 35 ..................................... ACCGGCCTGGGCTGGCGGGATGCTTCCAGGACGCG 62054 37 100.0 34 ..................................... ATGCAGATGCACGGGGCCCGGTTTCGGCTTGCCC 61983 37 100.0 34 ..................................... GGCGTTACGCTCGACTATCGAGCGGACGTTGTCA 61912 37 100.0 34 ..................................... GGAGTCTGTCGGCCGCGCTGACGCGAGGCCGGCG 61841 37 100.0 34 ..................................... GGGCGCTGGGTGAAGGACTTGAAGGGCCGCTACT 61770 37 100.0 34 ..................................... GTCGACGCCGTCGAGGCGAAGAAGCCGGCCAAGC 61699 37 100.0 32 ..................................... GTGGACTGGCCGCATGGGGGCCGGCGTCCTGG 61630 37 100.0 36 ..................................... TCTAACCTTGTCATAAATCCGCATCATCCACGTGTC 61557 37 100.0 34 ..................................... CGAAGTCCGCGCGGATGGCGTCATGCGCCTTGGT 61486 37 100.0 36 ..................................... TTCGCCTGGCCCGTCGCCTCGGCGTACCGGCGGAGG 61413 37 100.0 34 ..................................... GGCATCCCCGCGCGCAGCCACGCCAGGACGTCGT 61342 37 100.0 34 ..................................... CTGTTGTGCCAGTCGTCCGCGTCGTCGGGGGTCA 61271 37 100.0 35 ..................................... ACGGACTTGAAGTCGTTGCCGTCCATGATCACGTG 61199 37 100.0 34 ..................................... AGCCAGAGTCCAGAGCTCGACCGGTGGGGCCGGC 61128 37 100.0 34 ..................................... AAGGAGTCCGAGGTCGCCACGGTGTTCGATGCCG 61057 37 97.3 35 ..................A.................. CGTTCGGAGGGGCAGGAGCAGAGCGCCACGGCGGC 60985 37 100.0 34 ..................................... TCCGCCAGCTCCAGCACGAGTTCCAACTTCGACT 60914 37 97.3 33 ..T.................................. TTGGGGTCCGCGTTCTCAACCTCCGCAGCCTTG 60844 37 100.0 34 ..................................... TTACGCGACATGCAACGCGGCGCGCTCGACCAGG 60773 37 100.0 35 ..................................... ACCGGCGTAGAGCTGGGGAAGCACGGGCAGGGCAC 60701 37 100.0 35 ..................................... ACCGGGCGCTTCCGCGAGGGCTTCGGCGAGCTCGG 60629 37 100.0 32 ..................................... CGAGCAGTGGCAGCGCCCGTGCATCGGCCCAT 60560 37 100.0 36 ..................................... AGCGTGGAGCGCAACTCCGGGGTGGACCCGAACAAG 60487 37 100.0 36 ..................................... CCGTGAGTAGTTGCTGGACTGCGAACTCAAGCTCAA 60414 37 97.3 36 .........................A........... TACTCCCGCTTGGTGGACAACCTCTCCGGCCCCGCG 60341 37 100.0 33 ..................................... TTCCCGACGTTGGCCACCGTGTTGATGCCGCTG 60271 37 97.3 33 ...................A................. ACGCAGAAGCGCGAGCCCGTCTACGACGCGCTG 60201 37 97.3 34 ...................A................. ATGTCGCTCGACATGAAGGAGTTGTCGGGCTTCA 60130 37 89.2 33 .........T..T......A................G CTTGCTTGGATGGAGCAGGTAGAACTGACTACC 60060 37 91.9 0 ........G.A.....T.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 65 37 99.5 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGTGATGCGCTGATGCGTAGATTGACCGTGTTGATTTGTTACGACGTGCGGGTGTCGGACCCCCAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGATCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAAGACGATGCCCGAAAGACGGAGCATCATGGCGCCAGGGCACCCCTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCTATCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGCGGGGCAGGAACGGCGGGGCGCTTTCGTTGCCCCGCGGGCCGGTTCGCGAAATTCGGCCGGATTCCGTAGTCAGAACAGTATGTTGGAAGGGCAGG # Right flank : GCCCACGACGTCGTGGGTGGCATCAGCCGCGCCAGTCGCTCCTCGTGAACGCGAGGACTCTCTCTCTTCAACAGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCGTGCTCAGGCTCCAGAAGTCACCGGGCATGCCCAATACACGGCACTTCTGGCTTGAGGTCTTCGGGGATGCCCGTTTCAAGCGCAACGGCTCGTTCCTATCCGACGTGAACGCGGCCAACGCCCATCGGCTCACGACGTTGCTCATCGCCGTGAGCCGGCTGGACGAATTCAAGGAGGATCGCAGCGCCCCTCCTCCCTTCGCACATGGCCGGCAGGTGACGACGTTCGAATTCACCGTGGACGGCCGGCGCACGGGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCAGCAGGAGGCTGCCGCTTACGGCATCGAACTTTGAGCGCGAGGACCCCGGGCGCCCCAGGGCCGGAGGAACACCTCCGTCTCCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 47202-50774 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLD01000064.1 Myxococcus sp. AB022 NODE_64_length_53181_cov_70.5_ID_5363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 47202 36 100.0 34 .................................... ATGCCCTTGGAGACGGAGGTGGGCTGCGCGGTGC 47272 36 100.0 35 .................................... TAGGCACCCTGCAAGTGAGGCCATATGCTTTTGTA 47343 36 100.0 34 .................................... TGCCTAGCAGCTTCGAGCGCCCACGGAACTTGCG 47413 36 100.0 38 .................................... CTCACGGTCATGAACACGGGAACCCTGGATGACCTGCG 47487 36 100.0 34 .................................... TCGTAATAGGGCCGCAGGACGCCAGTTTGATGCG 47557 36 100.0 35 .................................... GTCGAGGCAACCGCCGTGGAGAGGGGATTGGCCTT 47628 36 100.0 36 .................................... TAATAGCCCATCGCTGCGCTGACCATCAGCGTGTAG 47700 36 100.0 35 .................................... CGCTTCACGTGGTAGATGCGCAGCTCGCCGCCGAG 47771 36 100.0 39 .................................... CTTCTTCATGGTGCTCTCTGGCGGCTGCGAGGTGAGATG 47846 36 100.0 34 .................................... TGTTGGCCTCTGCCCTCTCTGACCTCTCATGGTC 47916 36 100.0 36 .................................... GTGTACGGCGCGGGCGTCGATGCGCCGAGGAGCACG 47988 36 100.0 33 .................................... CGGCCGGATTCGTCCCGCTCCAGCTCGCCGGGC 48057 36 100.0 38 .................................... ACGTGCAAAACGTCCTGAGGCTGATGCGCAACTTGCAT 48131 36 100.0 37 .................................... AAGCAGAAGGCCGCGGCCGCGCGCGCTGGCCAAGGTC 48204 36 100.0 37 .................................... CCTAAGTAGATGCCCATCTCCGGGTGCACCAGCAGGT 48277 36 100.0 33 .................................... CACTACATGGCCGCCAAGGAGGCGCTCTTCGAG 48346 36 100.0 35 .................................... ATGGGCTGTCGCTGGGTGTCGTCGCGTATGACGGT 48417 36 100.0 42 .................................... ACAGCCTTCCTTGGTCGTGGTGCGCTGGCGGTGTCTCTTCCA 48495 36 100.0 37 .................................... TCAATGATTTCTCATACCCCCGCCATCTCTCTGTCTA 48568 36 100.0 41 .................................... TAGCGCCTGCTCTCCCCTGCACGGTGCGCCGCCGCCTCGGC 48645 36 100.0 41 .................................... AGGTCCTTGGTGCCGTTGGGAAACGGCACGAGGGTATTGAG 48722 36 100.0 39 .................................... GTAAATGAGGCTGTAGCTGCGGGCCTGGGTGTCATTGAG 48797 36 100.0 33 .................................... GAGTCCAGGACGCTGTAAACGGGCTCAACGTAG 48866 36 97.2 37 ..........T......................... CCGCCGTAGGGCTTCGGGCCGACGACCCAGAGGGAGT 48939 36 100.0 36 .................................... CCTCCCTTAGCGAGTTTCCACCTCTCAAAATCCAAG 49011 36 100.0 37 .................................... AGCCAAGGGCTCTTCACGCTCCAGCCGGGGCGCTTCA 49084 36 100.0 35 .................................... GTGCGTGTGGCCATCGCGATCCCCGAGGACGGGAA 49155 36 100.0 35 .................................... TTGCAGTTGGCGCAGTACTCCGACGTCAGGCTGTC 49226 36 100.0 36 .................................... TGACGGAGTACGTAATGTAAGGGATTGCCTTGTACC 49298 36 97.2 37 .........................T.......... CGGTTGGCGCTTGGGCCATGGGTAGCTTCTGGTTCCA 49371 36 100.0 37 .................................... CGGTAGTCCGCGGGGAAGTCCATCGCGCGCTGGAGCT 49444 36 100.0 36 .................................... ACGTCCTCACCGGTCATCAGCCTGTTCCGCGCGATG 49516 36 100.0 34 .................................... GCCCGAAGCAGCGGCAGCTTAGGGTCATTGGCGA 49586 36 100.0 35 .................................... TGTATTGTTCAGCGTCGCCATACGCATCAAGCGGA 49657 36 100.0 35 .................................... TCGAGCGGCGACGTCGTCGGCAACTGCTCCGCCGC 49728 36 100.0 39 .................................... TTCCCTGATTTCAACATGGGCACCTATGAGGAGTGCGCT 49803 36 100.0 36 .................................... CGTTCACCCCCGAGGTGAAAGCCCCGCTGAGTTGAT 49875 36 100.0 38 .................................... ATACGTCTCCTCTGTTGCTGTGGATGTGGCCTAGGACG 49949 36 100.0 34 .................................... AAGGAGCACATGAAATTCACGGGCAACGACAAGG 50019 36 100.0 37 .................................... CCCTTGACGGTGGTGCTGTTTACGGCAACACTGAAGG 50092 36 100.0 35 .................................... CACTGCTTTTGTCTTTCTGTCAGGACCTCGTAGTT 50163 36 100.0 36 .................................... GATACGCTCCAGGCCACCCCGCATCGCAGCCACCTC 50235 36 100.0 39 .................................... ACAGACTCCACGTCGGACGGGAGGGGCAGCTCGTTGAAA 50310 36 100.0 33 .................................... GAAGAGGAGCTGCGCGCCGCGCGGGAGATTATC 50379 36 100.0 36 .................................... CCATGGCCAGCAGGCATCGGGAGGCGCGGGCGTGAA 50451 36 100.0 34 .................................... CGTTCAACCGCGAGGAACGCGCCGTCAGGCAACG 50521 36 100.0 37 .................................... TAGTTGGCGCGGTCCTGCGCAGTCGGAGTGGTGCTGG 50594 36 100.0 36 .................................... CGTCCTTCCAAGTCATCCACGACGCGCTCTGCCGTT 50666 36 100.0 37 .................................... GTGAAATCACGGAGTCGGGAAGCAGCATCCGCCAGCG 50739 36 97.2 0 ........................T........... | ========== ====== ====== ====== ==================================== ========================================== ================== 50 36 99.8 36 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : TGGCGTGGGTGGAGGCCCGGCGCGCGGACAAACTGGAGCAGAAGCAGGTGTTGGCTGTTTTCGAGACGGATTGGCTTTCGCGGCTGGTCTCCCTGTCCCCCGAGGCTCGCGACGCTGGGGCCAGGGCGCTGCGGTCGCTCGTCAAGAGCCCCAAGCTCGAAGCGCGAAGGGATGCGCTGCTCGCCCGGATGGGGACGGACGTGGAGGGACGCTGAGGGACCTGCTCCCCCCCGTGTAGGGGCGCTGTATGATGAATGACATTCAAGCACCTCGCCGTGGCGGAGGCCCGCGCCCTCGAAATGGACGATTTCCCCTGTTGTTTCGTGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCTGAGTGATTCCATGGGGTTCGGATTTCTGGGTAGGGTCCGGGAGGCACAACCCTGGCGAAAGCGGGGGAGGTGCTTGAAAAGGGGGGTGGTAAGTTGGCGGAACTGCTGGGAGATTCAGACGGGCA # Right flank : CCCAGGGGCGGGAGTCGAACCCGTACCCGGGAGGAGCGAAACCCCAGCAGGATCGCGCCCTTTCCTCTCAACCTCCTGGACTGCGTTGGATTCGACCTCCCGCCACATCCCCTGCCGTCCCGCCCTGTTCCAGCGCGCTCCGCAGGGGCATGCGACACACGTGCAACATGGCGGGGCCTGAAAGAGATGGGCTTCAACCCGCCTAGAGAGAGGCCGAGTTGCGGATGGCTCGGCCCCTCTTGTTCCTACGATTGGTGCTGGAGCGGCTCCAGTAGCCCCGCGCCGTCCAGCACTTCACGCACGCGGTCAGCAAGTGCCACGTGTTCTGGGTTGCTGACCGTGAAGCGCTCGGGAGTGAGGACGATGAGGGTCCCTTTGTCTCCCACGGGTTCGATGTGGACCGGAGCGGGGAGGGGAGGAATTGTCCCCCGGTGCTGGGCCAGGTACGTCACCCACCCGACGTATGGCGATTTCGGGACGCGCCGAGCCTCAGCAATATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 94220-90955 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLD01000016.1 Myxococcus sp. AB022 NODE_16_length_122753_cov_77.1798_ID_5265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 94219 36 100.0 35 .................................... TCGTGGGTGTCGCCGTGGCGCATGGCCGCATACAA 94148 36 100.0 36 .................................... ACGCTTCCGGGTATTTCGACCTCGAAGGCTCCCACA 94076 36 100.0 35 .................................... GACAGCGCCTGCCCGTCCTTGCCCGCCACCTCGTG 94005 36 100.0 34 .................................... TACTTCTCAATCGCTTCAACCAGTTCCTCCCCAT 93935 36 100.0 36 .................................... ATATGGAGAAGCTTTTCTCGAAATTTTTCCGGGCTC 93863 36 100.0 37 .................................... TTACGGCCTGCGCTGGGCGCATGGTGGCCAGCGAATG 93790 36 100.0 34 .................................... CGGTCATCGGTCGTGTCGTAGCCGGTCAGGCGCT 93720 36 100.0 35 .................................... AGCCCGCTCTTCTCGTGCATCGCGAGGGCCCCAGG 93649 36 100.0 35 .................................... TTGTGGGCCATGGTGAGTTTCCTTTGGGGTTGGGT 93578 36 100.0 34 .................................... TCGAGTTCCGCCGACGCCTTGCCGTAGGCGACAT 93508 36 100.0 35 .................................... AACTCCACCGACTTCGAGGGCCAACCCGACTGGCT 93437 36 100.0 39 .................................... CAGCAAGCTTTGCAGTGCGGAGAAATGCCGGCGGGAATA 93362 36 100.0 35 .................................... GCCTGACCCGGCTCAGCCGTACGGGCCGTTCCCGG 93291 36 100.0 36 .................................... ACTAAGCGCAAGCCGGGCAGCAATAGACCGACTATC 93219 36 100.0 34 .................................... TAGAGGCTGAAGCGGTTGCGCTCGCCCGCGTTGA 93149 36 100.0 36 .................................... GCACGAGTCCTCGGACGGAACAGCGCAGGCGCCTAC 93077 36 100.0 34 .................................... TCTCCCCTCGCCGCAAGGCAGGGGCGGTCCTCAA 93007 36 100.0 35 .................................... GAGGGATTGCGACACGTTGCCCGTCCTGGGTCCAG 92936 36 100.0 35 .................................... AGGATCGCGTAGAGCACAGCCACCATCTCCTCCCG 92865 36 100.0 38 .................................... TGTCCTGGCGGAATGACTGCATGAACAACCCCATTCCG 92791 36 100.0 39 .................................... TCCTGTTCAACGTCGCCCGTCGCCATCACGCCTCCTAGG 92716 36 100.0 34 .................................... GCAACTGGCGCGGACTGGCGTAGAAGGAGTCCAG 92646 36 100.0 36 .................................... CCGAGCAGAACCCCGGGTAGTTGGCCTCTACGACAC 92574 36 100.0 36 .................................... TCGGAGCGCTGGCCGAAGTAGATGGTGACGTTGAAG 92502 36 100.0 38 .................................... GTCCCGCCAGCACGGGGCGATTGTCACCACCTCGGACG 92428 36 100.0 37 .................................... CGTCGGCTGCGCAGAGGGGCTGTGATGGCGGCAGTCA 92355 36 100.0 41 .................................... CCGGAATAACTCAGCGCCTTGAGTACACTTGGGTGGTCCGC 92278 36 100.0 37 .................................... TCCTCCGTCACCAGGGACAGCGCCTCCAGCGACACCT 92205 36 100.0 37 .................................... CCCTAGCAGGTACCACGACGCACTGACACCCCATGGC 92132 36 100.0 36 .................................... TCCCCCATAGGCTTCAGGGAAACGGTCACGAAATTG 92060 36 100.0 33 .................................... TTCCTGGACCCCGCTGGCGCCGCCGAGGTCAAC 91991 36 100.0 36 .................................... AAGGTAGTCACGGCTGCGTCGAGCAGCTTGGCGAGT 91919 36 100.0 33 .................................... GTGATGCGCCGACGCAGCGCCTCTTCTTCACAA 91850 36 100.0 33 .................................... TCCTTCCGCAGGCGCACCAGACGTTGCAGCGGC 91781 36 100.0 40 .................................... ATGCTGTCGAGTCGCGACAGATCTCCGGCGCCGATGGTAC 91705 36 100.0 34 .................................... TCGTCCCGTTGCACGAGATCCGCGACGAGGAGAA 91635 36 100.0 36 .................................... CTGACGCCCCTCCAGTCGAAGAAGGGAACGAGCGTG 91563 36 100.0 37 .................................... ACGTCGGCCACCTCCCCAAATGCGTCAGCCGTCGTCT 91490 36 100.0 35 .................................... GCGGCAAATCCTCGCGGACGTGGCGCTGGAGATTC 91419 36 100.0 36 .................................... AGCGGTGAGTGCGCCTGCGTCGTGCCGTCCTCCAGG 91347 36 100.0 35 .................................... GCCCGGAACCGACGCGAGCGCCGCCAGGCACAGCA 91276 36 100.0 36 .................................... CCGGCCTGGGCGGCCTGCACGCGACCCCCAAGGGCA 91204 36 97.2 37 ...........T........................ GTGACGCCGTCCGCCGCCCAACCCTCCAGTCCGCAGT 91131 36 100.0 36 .................................... AACCGCTCGCTCTTGGTCATCTGGGTCATGGTGACC 91059 36 91.7 33 ...TT....T.......................... TCCTTCCGGCAGTCGCAGTTCCAAGGCTTCATA 90990 36 88.9 0 A.............................C.A.G. | ========== ====== ====== ====== ==================================== ========================================= ================== 46 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGACCCGCGGCGGTGGCGGAAGGTGTATGCCCTGCTGAAGGGATATGGGGAGTGGTTGCAGCTCTCGGTGTTCCGTTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGATGCCGTGGATACGTTGTTAGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAAGCAGGCGACAATCAAGCACCTCGCCGTGGCGGAGACCCGCAGCGGCGAAAACGGCGGATTCCTTTGTGATTTCATAGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATAGGGTTGGTGATTCTGGGTAGGGCCTGGGACGGCCAACCTGCGTGAAGGAGGGGGAGGTGCTTGAAAAGGGGTTTGTAAGGTGCTGGAATTGCTGGGAGATTCAGGCGGGCA # Right flank : GTTGGGGGCGCGTCTGGGCGTTTGCACTGGCCCCTCGGAAGGGTGACCGCGTGACGGGGCCTCCAGCCGTTCCTGAGCGGCGCTGGGGCCACAGCCCCATTACCGGAGTCCCCGGAACGAACACCCACAAAGTGCGCAATCCCTAGTTGGTCGGAGCGGTGCTTGGGGGTAATTGACTGTGTTTGTGTCAACATACGCGCAGGCTTGGTAGGATTGTTGATGTTGCGCAGAGGTCTTGTTGCTTGCCGCGAGTCGCCAATGGAATTTCAAAAGAGATAGGCTTTCGCCCATGGCCAATGCCGTTGGCGTGAACAAGATGTCCGTTGTCACCAAGGACTCCAATGGTGTCACCGTCGCCTTCCCGGACGTGTGCAAGACGCCAAGCCCCGCCGGGCCGATTCCCATTCCCTATCCCAACATCGCCAGGTCCTCGGATACCGACCAGGGCACCAAGAAGGTCTCCGTGGGGGGCAACCCGGTGTGCGTGAAGGACTCCAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //