Array 1 677-2704 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAG01000032.1 Neisseria meningitidis strain Nm612 Nm612_scaffold_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 677 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 743 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 809 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 875 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 941 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1007 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1085 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1151 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1217 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1283 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1349 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1415 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1481 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1547 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1613 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1679 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1745 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1811 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1877 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1943 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2009 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2075 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2141 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2207 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2273 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 2339 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 2405 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 2471 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 2537 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 2603 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 2669 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //