Array 1 2443563-2446822 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMP01000001.1 Alcanivorax indicus strain SW127 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2443563 37 78.4 37 A.....G..T...G...G.CA...T............ CTAGCAGGGGCGCCGTACAGTTATTGACACGTTCCGA 2443637 37 91.9 30 T.C..C............................... CTTTACGGTGGAACACCTCGGTCAGTAACA 2443704 37 100.0 30 ..................................... AGGTTTTAGTACCACCTCATTATGGCTGGA 2443771 37 100.0 30 ..................................... AATCCCCGGTTAGGTGAAGCGCAAGCGCTA 2443838 37 100.0 30 ..................................... GCTTTTCTTTTTATATCAGTTAGTTGCATA 2443905 37 100.0 30 ..................................... CCGGCGGTAAGCAGGTGCAGCGGCCCGATC 2443972 37 100.0 30 ..................................... CGTTCTGCGCGCGACTACAATCCCCTGGAG 2444039 37 100.0 30 ..................................... AAGAAAGCCCGCGCAGCCCTCGCCAAAGCA 2444106 37 100.0 30 ..................................... GTGACGGGCTGCGGCGCCGACACCACGGCG 2444173 37 100.0 30 ..................................... CGTTCTGCGCGCGACTACAATCCCCTGGAG 2444240 37 100.0 30 ..................................... AAGAAAGCCCGCGCAGCCCTCGCCAAAGCA 2444307 37 100.0 30 ..................................... TCTTGTTCTTCGTCGGCTTTGTTGCCTATG 2444374 37 100.0 30 ..................................... CGTGGGGAACGCAATACATCGGGTGGGCCT 2444441 37 100.0 30 ..................................... CCCGGCGTCTGCCGCCTGCCCTGCCGCCTC 2444508 37 100.0 30 ..................................... GGCAGCTCGCGCACCGCGACCGAGAGGAGT 2444575 37 100.0 30 ..................................... GCCCTCCCCCTCGGCCCGCAAGGGTGGCCG 2444642 37 100.0 30 ..................................... AGTGTCTCCAGGGTAATGGCCGCCTCAGTG 2444709 37 100.0 30 ..................................... GACCGGATCAACGCAAAGCGGATATATGTC 2444776 37 100.0 30 ..................................... GTTTGACCTTCATCCCCTGCACCAGACCTT 2444843 37 100.0 30 ..................................... CGCTCCGCGCGCGACTACAATCCCTTGGAA 2444910 37 100.0 30 ..................................... CGAGTTTGTGCCAACGCTGCCTGAGTTCTT 2444977 37 100.0 30 ..................................... CATAATTACACGGTCATGAGGATAAACTTC 2445044 37 100.0 30 ..................................... TGCCGGGCAAAGCTACGGCGGGAACCACGG 2445111 37 100.0 30 ..................................... GTCGGGGCGGTCTCCCAGGTAATTTTCTGG 2445178 37 100.0 30 ..................................... CGCTCTGCGCGCGACTACAACCCGTTGGAG 2445245 37 100.0 30 ..................................... CTTTTTCATATCGGCCATGGCGCGCTGGTA 2445312 37 100.0 30 ..................................... CGCGAGGTGTCGAACCCCCTTGAGGCGATC 2445379 37 100.0 30 ..................................... GGAATTCATGGTGAGCAGGGAGGCAAGAAC 2445446 37 100.0 30 ..................................... CACCGCACCAGGTGAATACGCAATCCAGGA 2445513 37 100.0 30 ..................................... GAGAATAAAACAATCCCATAACTGCCCTTA 2445580 37 100.0 30 ..................................... GAGGCGGCGCTGGACGCCATCGACGATCTG 2445647 37 100.0 30 ..................................... GGCGCAGCAGTCCATCCAGCAGGTCGGCCT 2445714 37 100.0 30 ..................................... CTGGAACACTTCGAGGGCTGCGTGTACGTC 2445781 37 100.0 30 ..................................... CCATTCTTCACGAGCGTGACCGGCTTCGCC 2445848 37 100.0 30 ..................................... CTTTGCGGCACACCCACAAGATGCGCTCCG 2445915 37 100.0 30 ..................................... CGCCAACGGTGGCAGGGTCTGGGCCGAGGT 2445982 37 100.0 30 ..................................... CTACGAACAGTGGTCCCCCGTCGATATGCC 2446049 37 100.0 30 ..................................... CTGCATATGTGCAACGTGGATCATTTCATA 2446116 37 100.0 30 ..................................... CCTGCCGGTGAAAATGCGCGTCATCATACC 2446183 37 100.0 30 ..................................... AAACAAGTGGTCCATGTGATGTTTTTCTCG 2446250 37 100.0 30 ..................................... GTTGATGCGACCATTTTGGTTCCTTGGTTG 2446317 37 100.0 30 ..................................... TTCGGCCCTTGCACCTTGATGTTGGACAGC 2446384 37 100.0 30 ..................................... GCTTCATCTGGCAAGCCGTCAAACGGCAAA 2446451 37 100.0 30 ..................................... CACGGCGCAAGCTCATGCGGTGAGACGCCG 2446518 37 100.0 30 ..................................... CGGGCGAGTTGACGCGCCAGTAAGGGCATG 2446585 37 100.0 30 ..................................... ACCTATGATGGCCGTTACATCGACCCGCAG 2446652 37 100.0 30 ..................................... CTGCTCAAGGACGGCATGCTGCTGCGGCCT 2446719 37 100.0 30 ..................................... CACCTGATGCGCGTCGCGGCCGTCGTGTGG 2446786 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 49 37 99.4 30 GTTCCGATTCCCCACCATCGGAAAGTTCGATAAGCTC # Left flank : ACAAGCTGGTCTCCCTGCCCGTTGGCTCAGACCCGGAGAAACGGGTGCGGCATCGCGACATATGGGATCTGGCCTGGCTTCACAGGCAAGGCACCCGGATGGATGTGGATATGGTACGGAGGAAAATCGATGATTACCTTGTTTCAGATTATGATGACAAGGTCGTCCGAATGATAGAGTGGCTTCCAGACATCATCAGCGGGCGTGCCTTCCTGGATGAAATGAAGCGATTTGTTCCTAAAGACGTATATGAGCGGACCCTGGGTCAGGATAAGTTTTCTACATTTTTGCTGACCAACATTCGGGAGCAGCTGATTGATGTGAGGAACTCATTGCAAGGAACTCGCACTGAGGCACCTCTATTCAAGATGTAATAAACTTGATTAGTACCTGAAAATAGTAATGGGATATTCGGCCAACATTGAGGATACTCTACATACTGGCACGCACAGGGAAGCACTATCACTTGACTGACTGCATACTGATCCATCCGCGCGCCT # Right flank : CTGAATCAACCTAACCCTTTGTCAGGGTTAGGTTTTTCTTCTATATCAGCATGATCTGGTCTGGCGCATCAGGTCTTTGCTGTTTAGGGCGCGGGCCAAGAAACTCGCGGGTCATGGCGTATTGCTTGTCTGTCATGAGCATAAAAGCAACCTTGGCATCGCTCGGAATCTGGTGTTTCAGACGCTGGATCATGGCCTCAGCGGCGGCCATCGTGGGAAAGTGACGAACATAAAGAGAGTATTGCACCTGTATAAACGCGTTCTTTAACAGACGCTTACGGAATACAGTGTACTCATGCCGAGCTTCCGGCGTGGTCATGGGGCAGTCATAAACAGCAATTAACCACATGACTCTCCATCCGTTGATTGCCATGGCCTATTGCGGGCGCTCAGGCAGCAGCAACTTTCGGCGGCGCCCCACCCCTCCCGCCTCCAGAATCCGGAGGTAGCTCGCGATGGTTTTTCGTATCGCAGCTGGTAGGCGAAAATCCTGATCGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGATTCCCCACCATCGGAAAGTTCGATAAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCGATTCCCCACCATCGGAAAGTTCGATAGCATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.10,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //