Array 1 283134-286144 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSL01000005.1 Paenibacillus vini strain J42TS3 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 283134 33 97.0 34 ................................T TCAACATCATTTTGTTGACGAATTAGAACTAAAT 283201 33 97.0 33 ................................G GGATCGTTGTTGTAATACTGCTCCAGCCGGAAA 283267 33 100.0 32 ................................. AGGTGGCCGGTGCCGAGCAACTGAGAGACGCC 283332 33 97.0 32 ................................T AGCAAGTCATCTTCTTCAAGCAGATAGGTTTT 283397 33 97.0 32 ................................T GCCACTTGTCAGACCTCCCTACTCAAATGTAA 283462 33 97.0 34 ................................G TAGTTTTAAGGGGGAAATACCCGTTTACACCGGA 283529 33 100.0 33 ................................. AGTAGCAGAAGCAGCAAAAGCAGCGGAAGAAGC 283595 33 100.0 33 ................................. TCATATTGTTGAACTTTTATTGTACGTTTATAC 283661 33 100.0 33 ................................. ATAAAGCGATTCGGGATATGACAACGTGGAGAC 283727 33 100.0 33 ................................. TCATTCGTGGTCTTTTATATTGGCCGTTACCTG 283793 33 97.0 33 ................................T GTTAATAGTAATAAGCCACTAAGATTAGGTATA 283859 33 97.0 32 ................................C TGTGAGTATTGGTGTTCCTTCACTATCTTTAG 283924 33 100.0 34 ................................. TAGGGATCACAGTCAGACTAGTGACAGCCTTTAG 283991 33 100.0 33 ................................. ACGTCGTTGCCGTCAAATTTTGGAAGTTTACGC 284057 33 97.0 32 ................................T CCAGTTTGAGAATGAAGGGGTTCGCATCCGAA 284122 33 97.0 34 ................................T CCCCATCCTGACTCATGAGCTGCGACCGCCAGCG 284189 33 97.0 32 ................................G ATCCTGGCAAGAAGACCCGCAAGAAGAAACCC 284254 33 97.0 35 ................................T ATGAAAACAATTAACGAACTGGTAAACGTAGCACA 284322 33 97.0 35 ................................G GTTCAGGTGCTGCTGGCATTGTTCCCGGAATGGCC 284390 33 97.0 33 ................................C TGCCTGTGATTCAGAAAATTACGGAAGAAATTG 284456 33 100.0 33 ................................. AGTAAGGCCATGCAGCAGCCGATCCCACTAGGC 284522 33 100.0 34 ................................. ACCAAGGAGTAACGGATAACCGTTGCTCTTGTTA 284589 33 97.0 33 ................................C TGATCTAGCAGTGCTGACTGAATATAGCGCGGA 284655 33 100.0 33 ................................. TAAACGTGTCCGTCATGGTTGTTTTCTTTGAAT 284721 33 97.0 33 ................................T TGCCGATATACAACGCAGTTCTTCCGGCGCTGA 284787 33 100.0 34 ................................. CCTTTACTGTTGCCTCTCCGTGACACTTGTCGCC 284854 33 97.0 32 ................................T CCCCTCTAAGATAAATGCCTTATACGGCCTCC 284919 33 100.0 34 ................................. AATTCGTAATTGGTGGACGCATTCCAGAACCTCC 284986 33 100.0 33 ................................. TCTAAGCAAATGATACTGGATTTTTGCTGTGCT 285052 33 100.0 32 ................................. GATCTGCACGATGCTCTCGCCAGGCGCTAAAG 285117 33 100.0 34 ................................. AGAAGTGGACGAGCTTCGAAGGCACGGCCAATCC 285184 33 97.0 32 ................................T TCTCAAAGTCCTTGGAAAGAAGCCGCGAACTG 285249 33 97.0 33 ................................T TGAATGGGGATGGACAAATACAAGTTGTTCATT 285315 33 97.0 34 ................................T GCTCCTGAATGGTTTATGGAAGAGTTTCCAAAAG 285382 33 97.0 33 ................................C AAAATGAAAGAACTTCGGGAAATCAAAGGTAGA 285448 33 97.0 34 ................................G TGACTGTGAATCCAGCGCCAACCGCTCTGGTAGC 285515 33 97.0 35 ................................T TGTTCCAGATATTGAAAGTTTAAAATCAAAAGACA 285583 33 100.0 32 ................................. AAATTGAAGGAACGTCATATAAGGGATGAAAC 285648 33 97.0 32 ................................C TACGTAAAATCATAAATGCTGTATTATCTTTA 285713 33 97.0 32 ................................C ATTGTCCTAGATCGTAACCTAAAGGTATTTCT 285778 33 100.0 33 ................................. ACGCCGAACATATGCTTAATGCCACCGTTTGGA 285844 33 97.0 34 ................................G AACGAAGGAACTCGGTGGTTTTTTAACAAGACGT 285911 33 97.0 34 .............................G... AGGCTGCCGGTATTGGGCTCTCTAAACTGTTTAA 285978 33 97.0 34 ................................C CGAGGGTAAGTGCCATAGAGTCCTTCCATATTAG 286045 33 97.0 34 ................................C CGAGGGTAAGTGCCATAGAGTCCTCCCATATTAG 286112 33 90.9 0 .......................A.......AT | ========== ====== ====== ====== ================================= =================================== ================== 46 33 98.0 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Left flank : CTATTTTTGTAAATTTCAACTTTTGAAGAGAAATAGAGGACTTTGAGGGCCTTATTTTCCGGATTAGGAGCCTAAAAGCGGATTATGCGTGAAAATAATATAAATAGAGCCCCAAAAAGACCTTATAAACGGTAGAAGGGGGGAAACTGCGGGATTAGGGTCTCAAAAGTCCGCTATTTTTCCGCGGGTAGATATATTTTGCAAGATTGATTACACGGCTAACTCATCTATATAAACATTAGTTCATCATAATAGAAACATTTGATTCGAGCAAAGGGATAGCAGATTCTAATGTCGAAAATAAGAGTGAATATGTATACGTGAATTTTATGGTGCGAATGTATAGCGCACATAAAATTACTGGGAGATTCGCACCACGCATTATCCTTTTATTGGCAACTTTTCTAGAAACGAGCCGCTATTTTAAAGGCAAAGGCTTATGTGAAGATGATTTTTGAGTTAAAGAGGCGGTATTTCACATCTTTTTCTCGGAAATCGGA # Right flank : TTTGCTATCGGAGTCTCAAGGGGCTTGCTACCTGTCCACCTCAACTATATTAATACTCTCCCTGTTCAGACGATTAATCTCTTTACTTTACGCATCAACTCATACCCGTCTTTACGAATAAAATTAAACCACTTCCAGAATAATGAACTGCCAATTATTCGTGAAGTGGTTTTTGAATTATATAAATATTCATAGGATAGGGGGAATGGGGCGCGCTTTAACTTGCTAATTCTAATGCAAAATGATGACATGGATTGTTCATGTTAATAAAAATCGTTGTTGGAAGGAGAAAATCTGGTTCTGTCGAATCATTTGTATAGTATGGGGAATATTGTCAGAGGTCAATAAGTCCTATACCAGTTTGTTAGGTGAATGGGAGATTAGTTTAGAATAAAGGCACGCTTTTTCATAAATAAGATCGACTTCTATGGAGGAGAGAGATGAACAACTACATTGCCCACATCCGTGAAAGCGATTATCAGGAACAGTCCGTGGAAGAA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 294658-297254 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSL01000005.1 Paenibacillus vini strain J42TS3 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 294658 33 100.0 32 ................................. GCGATCTCGGCGCGTTTTTCCGCAATGAGTGC 294723 33 97.0 34 ................................G TGACTTATAAGGCAGTTACGATTGCCACCACAGC 294790 33 100.0 34 ................................. CCAAAATGCCAATCATTAATAATGTTGCAGCAGT 294857 33 97.0 33 ................................A CGCAGCTGGAGCGATCACATATGTGACAAAGGC 294923 33 97.0 33 ................................A TCTCCGTACCAGTCCGTCATAACCTGGGATTCT 294989 33 97.0 33 ................................A TGATAAAACTCCTCCTGCTGTGTTGTAATGTTT 295055 33 97.0 32 ................................T CGTACATGCCCGATAGAAAATACCACTGGTTA 295120 33 97.0 33 ................................G AAATCAATCGTGAAGAAACACGGAAACGGACCG 295186 33 97.0 32 ................................G CTATCTCCCCGGCTGGCCTTGTCTCGAAACAC 295251 33 97.0 32 ................................A AATAAGTTAAAAGTTTGTGGTATAGTAGATTC 295316 33 100.0 31 ................................. GGCCTCCATACCGGGGGCCTAAGGTTAGGGA 295380 33 97.0 32 ................................A GCCTGTTAGCGCAAGGTTGCGAGCTGCTGAAG 295445 33 100.0 31 ................................. TGTTCAAAGGTCGCAGAATCGTTGCTGTATC 295509 33 97.0 34 ................................G GTGCCGCCCTCATTTGTCACGCTCGTTATATCTG 295576 33 97.0 33 ................................T TGCGTCAAGTAAACAATATGCCATTCAGACGTT 295642 33 97.0 33 ................................G AAAACATGTCGTCCGGCTTGAAGAACAGTCACC 295708 33 100.0 33 ................................. AGGTCACCGACCCCACTGGTAAGCTACCAACGG 295774 33 97.0 32 ................................T CTTCCACTTTTGTCAACCGGCCCGCTGTATAA 295839 33 97.0 32 ................................T TAACTCCAGATCAATTTGCCGCGGTTAAGGTC 295904 33 100.0 32 ................................. CCCAGGGATGTTTCCACCCCCGGACGTGGAGC 295969 33 97.0 34 ................................T TTCCCTGCCGTGGCCGCGCACGTGACTGGCTACG 296036 33 97.0 33 ................................G AAACGTGCCTTTATGTCGCGGATGAGGACGAGC 296102 33 97.0 34 ................................A GATAGTGATGGGTTTATGGACCGGTCGATTAAGG 296169 33 100.0 32 ................................. GTTAGGCTGCGAACTCAACCGGTCCGGCCGCC 296234 33 97.0 34 ................................T ATTTCACGCTGAAAGGGTGTGGACGGGTAAACTG 296301 33 100.0 32 ................................. TCAATTACGTAAATTTTTCCGCGTTGCTCGAC 296366 33 97.0 33 ................................G CGAAGAAAATGAACGTGACCGACGACGTTGCGC 296432 33 97.0 33 ................................G CGAAGAAAATGAACGTGACCGACGACGTTGCGC 296498 33 97.0 32 ................................A TACCAACAGAGGACAACTTACCTTGATCCTCA 296563 33 100.0 34 ................................. TACTGAATCCGGTGTTGTTGTCGATCCAGACGGT 296630 33 100.0 32 ................................. TATTTCAATGCTGCCGCCGATAAACTGTCCGG 296695 33 97.0 32 ................................A GGGCAGTCAAGGTCTCCAAATGATAGGGGTAT 296760 33 97.0 33 ................................T TTGTAGCCGTGGCTTGTTTCAAGTTGTTGACGA 296826 33 97.0 34 ................................A CTAAGATCTGCAAAAGACAAAAAAGAGACGGTGA 296893 33 97.0 33 ................................G ACTCGGGAATGAAGTACTGTGAAACGGTGTATT 296959 32 93.9 33 ...........-....................A GTCAAGATTTACGGAGATGTAGATAAGCTTTAT 297024 33 93.9 33 .....C..........................T TCGGGGAGATTACAAGCGCCCGGCGAACCGCAA 297090 33 87.9 34 .........T..A......T............A CCGCGATAAATAGCGTTTTAATCAGCGCGGCGTG 297157 32 81.8 33 ....T.-....A.......T...........AA ATTTATCATGAACCCTGGAGATGCCATTCAATC 297222 33 78.8 0 CA......T.A.A.A.................T | ========== ====== ====== ====== ================================= ================================== ================== 40 33 96.5 33 GTCGCACCCCTTGCGGGTGCGTGGATTGAAATC # Left flank : AATGATCTGGATGAATACCCTCCATTTCTGTGGAAGTAGGTGTTGCAAGTCCATGCTGATCTTAGTTACTTATGATGTAAGCACAATGGATAGGGAAGGGCAAAGAAGACTGCGAAACGTATCAAAAATATGCCAGAATTACGGGCAACGCGTGCAAAATTCTGTGTTTGAATGTGTTGTGGATGCCACGCAATTCGCTGTGTTAAAGATGAAGCTGATTGATGTGATTGACCAGGGCGAGGATAGTCTCAGATTCTATCAACTTGGAAACAATTATAAAAATAAGGTGGAACACGTCGGCGTAAAAGAATCTTTAGATCTTGAAGGTCCCTTGATTTTGTAGTGCGAACCCCAAGCGAACATGAAATCCTTTGGGGATTCGCACCAAAAAATCGCTTCTTTTTAACTAGAATTTCAAGTAAATGTAAATTACTCCGGCTTAAAAAGTGTTTTTAGATGGGAAAGGTCGATTTTTGGTTCTGTTTTGCCCGAAAATCGGA # Right flank : TTTCATCTCTTTTACTTCTCCTCTAAACTTGATAGTCGCGTCCCTCGCGGGCCACCTACTGAAACACCTCACTTAGATATACTATATTTTCCAATCCTCTATCCGTGCCCACCGCCTTAACCCAACCCCTCCGTATGTTATAATAGATTACTAGGCTCGCAACCGGAGGAAGCTCATGAACAAGACGATTGGAATTTTAGCGCATGTGGATGCGGGGAAGACCACTTTCTCGGAGCAGCTGCTCTACTATACAAAGAGTATTAAACAGCGGGGGCGCGTCGACCACCAGGATGCCTTTCTGGACAGCCATCAAATCGAGCGGCAACGGGGGATTACGGTGTTTGCCGATCAGGGACGATTTTCGTATGGGAATGACGAGTATTATCTGATCGATACGCCGGGACATATCGACTTCTCTCCAGAGACGGAACGGGCGATTCAAGCGATGGATATGGCGATCATTATTGTTAGCGCCGTGGAGGGCATCGAAGGCCAGACGG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTTGCGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //