Array 1 423756-424794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYO010000003.1 Bacillus altitudinis strain 179-D 10A1 HS NODE_3_length_441494_cov_352.081380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================= ================== 423756 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 423821 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 423886 32 100.0 49 ................................ ATGAGTGCGTGGATTGAAATGCGTGGATTGAAATTCTTTCCTGAAGCGT 423965 32 100.0 33 ................................ ACTCATGGCATCTAGTATTGGTGTCTCTGTGCT 424030 32 100.0 36 ................................ ATGTAACTATGGAAGAATACGCCCATCAACGTTAAA 424098 32 100.0 35 ................................ AGCTTTATTGATCCTGCCCTTGAAACTGCTGAGAT 424165 32 100.0 33 ................................ AAAAGTAATTGAAGAATTAACAAAAATTCTAAA 424230 32 100.0 35 ................................ AGTGCGGCTGGGCTTTAGATATTAACGGTAACCCT 424297 32 100.0 36 ................................ GACTTTGCCAATCAAGGCATCCCGAATCAAGGCGGG 424365 32 100.0 36 ................................ TAGCTGGCGTCGCTAACCTGATCAAAGACGTACCAA 424433 32 100.0 34 ................................ CGTATTCAATATAAAAACGGCCGCATTCTCGACA 424499 32 100.0 34 ................................ CTTTTGAACCCACAACGGACGATCGTCTGCTATT 424565 32 96.9 33 .........C...................... CTGGGGCTTACGAGTTACGACTGATCAGCATTT 424630 32 96.9 34 ...........C.................... TTATTGTAATCGAATCGACCTTTAGCCCACAGAG 424696 32 90.6 35 ......T....C.......T............ AACAAAAACGATTTTAAAATTGATGCTGCTGCATC 424763 31 78.1 0 ........T..C......A...-...C...GG | A [424781] ========== ====== ====== ====== ================================ ================================================= ================== 16 32 97.7 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTCTTTGGAAGTAGGGGGATGTTTTTATATGATGGTTGTGGTTACGTATGATGTCAGTACAATTGATAGAGCTGGGAAAAGAAGACTGAGGAAAATATCTAAAATTTGTCAAAATTATGGTCAAAGGGTACAACATTCTGTTTTCGAATGTATTGTAGATTCAACGGAGTTTGCTATGTTGAAGAATAAGTTGTTGCAAGCTATCAATGAAGAAAAAGATAGTATTCGATTTTACCAAATAGGTAACCAATATCGAAAAAAAGTAGAACAAGTTGGTGCAAAGGAAACAATATTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAGTTTCCCTGAATCATTCGCACTTAAAAAAGAAAGATTTTTCGACAAACTCTATCTTTATGTGTCTCAATAATTTATATTTTGTATAAATAGAAGTATCTTTTTTAACTGATTTTGATAAAAAAAGTAGTTTTATTTGTTTTTTTTACTAAAAATCGCC # Right flank : GTCTAACTTATTATTTATGTTGAATTTTTAATGGATGCTAAATTATCATTCTTTTCAAAAGATAGTAAGTTTGCATATTTTTATTTCAGTAAAATTCAATAGGAGTTCAATAACCTCTTTTCCTTCAAATTTAAAGTGAAAGAGGTTTCAATGAAGATTGATCAGCCTATATATGCTGACAGCGTTTTGTTTGGCTTTTGTCATAAACAATGTACCTCGTTTGATGCTGCCCATCTATATACTTTCAATGATCGGGCTTATGTTCTGTCTCGGTCATATTGCGCTCCATTATCTACAGCGGATCAGATATTTGTTATACGATGAGAAACAATTGAAAGAGAATCAAATAAACAAACCTCCCGCTAAATGAAGGAGGTTTTTTACTTGTCTGTTTTTCAATGATTTTCTCGTTTGACTCCTTGAATTGTCTCAAAAGAGAGACGATGTTCCTCGTAAATCTGATTTGGACAATCAATAAGAGCATAATGATCCACGAGCTA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 259443-261221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYO010000006.1 Bacillus altitudinis strain 179-D 10A1 HS NODE_6_length_279779_cov_358.336741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 259443 32 100.0 32 ................................ TTGTATGTTAGATAAGTTTATTTCTTTATCAT 259507 32 100.0 33 ................................ TAAGAAAAGTAGTGCCAGTATTGCAGCAGTTGA 259572 32 100.0 34 ................................ TGTAATATTTTTGCTTTTTCCAAAACAGCCAGTA 259638 32 100.0 35 ................................ TGCTTTGAACGGAGAGAAAACCCACAGCACCTATT 259705 32 100.0 33 ................................ ACAAGACATTGCAAACAAGCTCAATGTCTCCAG 259770 32 100.0 35 ................................ AAATAAATCTTTGTCACAAACTCAAAACGAGTCAA 259837 32 100.0 35 ................................ AGCAAAAAGCTGGGTGACAGGTGATGCTATAAAAG 259904 32 100.0 33 ................................ AATGCCTATAACGTTTCATGATTCATCAAAAAT 259969 32 100.0 35 ................................ AACATACGCAAGATGAAATTTTTTCAACCTTACAA 260036 32 100.0 34 ................................ GACTCGCGCTTTGCCATGACGACATTGCCCTCTA 260102 32 100.0 35 ................................ ATTTTGTTTGTCGCTCATACCATTACCTCCTGATA 260169 32 96.9 35 A............................... TCAGAAGAGACATGCTCCCCTGATGACGTTTCAAC 260236 32 100.0 33 ................................ CGCTATCTCCAATCCTTGTAATGCACCATAGAT 260301 32 100.0 33 ................................ CTAAATCCACTGAGACAGCAGGCTTATCGAACC 260366 32 100.0 33 ................................ ATCCAAACACCGTCACCGGATGTGTTTGAAATC 260431 32 100.0 33 ................................ TATTATGAATACTCTTGTCAGGCAGAAGCTTAA 260496 32 100.0 37 ................................ TTGACGCTCATCTTGCTGACGGTGTAAAGCATGTGAC 260565 32 100.0 34 ................................ TACCCGGACAAAGGCGCCAAGAATAACGGTATCG 260631 32 96.9 34 .......................A........ AAAACATAGTTTTTAGCAACTCGTTTCGCATTAG 260697 32 96.9 34 ............G................... AAAAAAGATGTACCACGGATGCCATGAATATCGG 260763 32 90.6 130 ...........T.......T.......A.... TACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCGGGGGTGAAAACTTAATTCCTATATAGAAATTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA T [260792] 260926 32 96.9 34 .............A.................. AGAAAAAGAAAAGTGTGATGAAAAAGAATATCCA 260992 32 96.9 35 .............A.................. TCGCGATGTTGAGGGAGACGCGGTCTACGGCAAAT 261059 32 96.9 33 ........T....................... ATTTCAAGAACTTTTGTAATGGCTCTCAAAAAA 261124 32 96.9 33 ...........T.................... ACAGTACCACCGCCTTTTAGATAACGCATTACA 261189 32 90.6 0 ...................T..A....A.... | T [261218] ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 26 32 98.4 38 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAAATGTCCGTGAACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGGGTAAAAATGTATATTTCATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAAAATAATTGGCCGTTCTCCCAAATGAGTACAAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGGTTAGGGTTTTCGGTTAAAAATATTCGTCCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTTCATCCCACATCGGCGACACCTCCGGTTAAATGTCGCACTCTACATG # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 261508-261934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYO010000006.1 Bacillus altitudinis strain 179-D 10A1 HS NODE_6_length_279779_cov_358.336741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 261508 32 100.0 34 ................................ AAAAATAATTGGCCGTTCTCCCAAATGAGTACAA 261574 32 100.0 33 ................................ ACGGTTAGGGTTTTCGGTTAAAAATATTCGTCC 261639 32 100.0 35 ................................ CGTTCATCCCACATCGGCGACACCTCCGGTTAAAT 261706 32 100.0 34 ................................ ACTTTGATCACTCCATGTGATATAATTAAGATTC 261772 32 96.9 33 .............A.................. TCTGAATAGACCTTTTTCAATTCAACGGATTTA 261837 32 100.0 34 ................................ AGCGATGACAAGGCTCTCAAGCACATTGTATTTT 261903 32 75.0 0 ..........C.....A...A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTCGCGATGTTGAGGGAGACGCGGTCTACGGCAAATGTCGCACTTTACATGAGTGCGTGGATTGAAATATTTCAAGAACTTTTGTAATGGCTCTCAAAAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGTACCACCGCCTTTTAGATAACGCATTACAGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //