Array 1 219379-215188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUXI010000001.1 Streptococcus suis strain HN129 HN129_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 219378 36 100.0 30 .................................... TCAAAGATTATGAACGTGATAGTAACGCAC 219312 36 100.0 30 .................................... CGATAGCCTCGGTCTTGACCTGGTTAGCCC 219246 36 100.0 30 .................................... ATATTCTTCATATCACTGTTAGCATTACGT 219180 36 100.0 29 .................................... TACCCTTTTAAAATCGCTGAAAAAGCAGA 219115 36 100.0 30 .................................... TCATATCACCGAAGTTATAGATTGTCATAT 219049 36 100.0 30 .................................... CATCATTGTCTCTTCAGCTTGTTTCATTGT 218983 36 100.0 30 .................................... TGACGACTTCCTGTTATCCGCCAGAGCAAC 218917 36 100.0 30 .................................... CCACATCACGTTGATACGCTTCCCACGATA 218851 36 100.0 30 .................................... TATCACATTTGATACAGTAACGAAACAGTT 218785 36 100.0 30 .................................... AGATTATAACACCTTTACTGAAATTCACTA 218719 36 100.0 30 .................................... AAGGCGAAAATCAAAAATCCGATAATCTCG 218653 36 100.0 30 .................................... TGGCTCAAGGTTATCAAACATCTACATCTA 218587 36 100.0 30 .................................... GAAAAAATCTTTTTTAGAGAAAGAAATTTC 218521 36 100.0 30 .................................... TGTTAAAGATGAAGATGTTGACGTGTTTAA 218455 36 100.0 30 .................................... GATAATAAGGTGTGCAGTTGGTTTGAAACC 218389 36 100.0 30 .................................... GTATGATTCCGTTGAAAATTGTACTCGGTG 218323 36 100.0 30 .................................... ATAAGACGGTTCTCATGTGTTTCAACTTGT 218257 36 100.0 30 .................................... TATCCAAAAACAATCGAAGCCATTCTCAGC 218191 36 100.0 30 .................................... CTGTCTATCTCAACAAAGACTCAACTTATG 218125 36 100.0 30 .................................... TCTCAGGACTTCTGATTCTAACGGCTCTAC 218059 36 100.0 30 .................................... TTGATCATCACTGTCAATAAAGGAAAAGAT 217993 36 100.0 30 .................................... CATCAAGAGGTTACAACACTGCGTCTTACT 217927 36 100.0 30 .................................... TGACAGTCTAACTGGGGCACTTGAGGCCTT 217861 36 100.0 30 .................................... CTATCGCTGTGGCAGTTGGATTGATTGCTG 217795 36 100.0 30 .................................... CGTTATCGGCATATTTAACCCATGTATACA 217729 36 100.0 30 .................................... ATAGTCATACCAGGACTGTTCAGTCTCCGT 217663 36 100.0 30 .................................... AACATCTTCTATATTCTTAACATACCCTCC 217597 36 100.0 30 .................................... GCTTGAAAGTCAAGGACGTTAAGGGTGACA 217531 36 100.0 30 .................................... TACAAGCCTATGGAAATTTTTATGCTGTTA 217465 36 100.0 30 .................................... TGAAGCAAATGCTACTTTCACAGAAGCTTT 217399 36 100.0 30 .................................... TAACGCTTATGCGTTTCCTTATGTTATTGT 217333 36 100.0 30 .................................... TTCAAGTTTGTCTTTGCTCGCACGAGCATT 217267 36 100.0 30 .................................... TAATGGTAGAGATGGTGCTCCTGGACCCGC 217201 36 100.0 30 .................................... CACATTCGTAGCGGTAGATGATGCACGTCT 217135 36 100.0 30 .................................... GTCTTCGTAATGTTTCTGCAGAGACAGAAG 217069 36 100.0 30 .................................... GCACGGCTTAAACGTGTAACAGTAGCTGAT 217003 36 100.0 30 .................................... TGGGCTGAAAATCTATTTGAAAGTTCCGAA 216937 36 100.0 30 .................................... GGCTGACGTCACTAGTGAGATGATACCGTC 216871 36 100.0 30 .................................... AGACTGATCGCAATATTCACCGTCTCCTTG 216805 36 100.0 30 .................................... TTTTCTCCTCTCTTATGATATAATAAGAGC 216739 36 100.0 30 .................................... GTATAATCCATCTTTATAGTCATATCCAAG 216673 36 100.0 30 .................................... GTTAGACATATAGTCAATCGCATTACCCCA 216607 36 100.0 30 .................................... AACGTGGTAGACGCCAATCTTAGTCACGTT 216541 36 97.2 30 ..........................A......... TAAATTAGTATTAACAACTATTGGAGTAAT 216475 36 100.0 30 .................................... TTCAATGCAACAAAAAAAGCACCAACCACA 216409 36 100.0 30 .................................... CGGCCTGCGCGCTCTCTTCGATTGCTGCGA 216343 36 100.0 30 .................................... GTTAGACACCCACAAGACACACAGCATAGA 216277 36 100.0 30 .................................... TTTACCAGAATACTTCATGGATTAAGCCCC 216211 36 100.0 30 .................................... AAACTAATAATGGAACGACGAAAACAACAA 216145 36 100.0 30 .................................... GAGCAAGCCAGTATCTAACTGCTAGCCGTG 216079 36 100.0 30 .................................... CGGGAACGAGCACAAATATTCAATTTGGTC 216013 36 100.0 30 .................................... TGAGAAAGGAAAGGAAATCCTTTTACACTA 215947 36 100.0 30 .................................... TCGCTTGTCAAGCCTTGAGACTTACAAGGA 215881 36 100.0 30 .................................... AGAAATATATGTTACCGTGTGTTCAGTTAA 215815 36 100.0 30 .................................... GAGTGAGGGGGCGAAACTCCAACAGTCACT 215749 36 100.0 30 .................................... TCTCAGAAAATGGGCTTCTTCGACACCTAG 215683 36 100.0 30 .................................... GTTTTCTGGCACAATGTAAACGGTTTTCGT 215617 36 100.0 30 .................................... TACCGTAGGTGTGAAGGTGTCAGCATTCAA 215551 36 100.0 29 .................................... TTTGGTCTATCGGCTAGCTTTAGCGGTGG 215486 36 97.2 30 ..............C..................... CACCATTACACAAAACCAAACACCAACATC 215420 36 97.2 30 ..............C..................... CTATTCGTGGTTATCAACCATCTGTACATT 215354 36 97.2 30 ..............C..................... ATGATATGTGATTGTGATGGTTGTCTTATC 215288 36 97.2 29 ..............C..................... CCTATCACACAGATGATTGGTTTCCTTCC 215223 36 91.7 0 ..............C...................CA | ========== ====== ====== ====== ==================================== ============================== ================== 64 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTATTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATTGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTAGCTGAGACGAATGGTGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : TAAACTTTCAAAGTTCAAATGACGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTCCCTCTTGTCCATTCAAAGTTTTCCATGATATACTATATGTAATCGTTTTACTTCAAAGGAGATAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGGCTGACGGCATGATTGTTGGGCTAGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAGGAGGGCTTACAAATCACAGGCGTAACGACCTCTCATGCCACGGCTGAGCATGCTGCGTCCCTCGGGATTCCCCTAAAAAACATCGACGAGGTCGATCACGTGGACTTGACGGTGGACGGAGCCGATGAGGTGGACGGAGCCTTTAATGGTATCAAGGGTGGCGGAGCGGCGCTTCTCATGGAGAAGGTGGTCGCGGTCAACAGCAAGGACTGCATCTGGATCGTCGATGAGTCTAAGGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //