Array 1 29696-33356 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMP01000007.1 Turicimonas muris strain YL45 NODE_7_length_107867_cov_136.54_ID_2421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 29696 37 100.0 34 ..................................... TTTTTCCACTCAGAAGCTGCTGAATAAGACTTCA 29767 37 100.0 35 ..................................... TTAAAGCCGGTAAAAGAGTCGATTGAGATGGTTAC 29839 37 100.0 39 ..................................... TTCTTACCGGGATCCTAAGCAAAAGTCAGCGGATTCGGC 29915 37 100.0 39 ..................................... TTCTTACCGGGATCCTAAGCAAAAGTCAGCGGATTCGGC 29991 37 100.0 35 ..................................... TTCTACTAATTTTCTTGTTGCACGAGGCCACTTTC 30063 37 100.0 35 ..................................... TTAAGGATTGCTTGTTCACCTAAGTGAGCAAGGGA 30135 37 100.0 35 ..................................... TCCTCTTTAAATTCACAGAAGGAATCATCGAAAAG 30207 37 100.0 36 ..................................... CTTGACGAAGGTCATTAATCGTAATTGCATTGACAC 30280 37 100.0 36 ..................................... TATGAATTTTTCTTCCGGTTCTGTTTACGACTATTT 30353 37 100.0 35 ..................................... TAGAAATGATCTACAAGACCGGGAACACCATAGAC 30425 37 100.0 39 ..................................... TAACAGCCGTTTGGTCCAACCGATTAAAAACTGAATATT 30501 37 100.0 36 ..................................... CAAGAGGCGTCCCAACCACAAATCCACCAGAGTAGC 30574 37 100.0 35 ..................................... GATGAGAATCTTCAAAATTCTGTAAATGTTCCGAC 30646 37 100.0 32 ..................................... CGTAAAATTCGTTACTTTGCTTGCGGTGAGTA 30715 37 100.0 37 ..................................... TGAATGAATCACCGGGAAGGACTTCGTCAACGTAAAA 30789 37 100.0 33 ..................................... CGCGTGGTATTCCTACTCTAAGAAGACTAGTAA 30859 37 100.0 34 ..................................... CGCGATGATTCGCTGTATTCATGAGTCAAAAATG 30930 37 100.0 36 ..................................... TGATTACATTAGTCGGATTCCTCGTGCACAATATGG 31003 37 100.0 36 ..................................... TCATACCAGGCTGATTAAGCACAGTAGATCCAATAC 31076 37 100.0 36 ..................................... TACTTCTTTTGCCAACGGCACTGTTTTTGACTACTT 31149 37 100.0 36 ..................................... TCCTGACCCTGTTTCGAATTTCAATCTTTTGAAGCG 31222 37 100.0 35 ..................................... TTTAACAAGTCCTTTGTGGAACATGGTTATATTAT 31294 37 100.0 37 ..................................... TGCAAGTGTGCTCGTCCTATGCCGGTTTACGGTGTAC 31368 37 100.0 33 ..................................... GCACTGACCGCACGGAATTTGAAAATGCGTATA 31438 37 100.0 37 ..................................... GAGGTACTCGCTACACAGAAATTCTCCGGTCTCATTT 31512 37 100.0 36 ..................................... GCCTGACGCTCGTTTGCAACGGCCGGAGTACTTGGG 31585 37 100.0 37 ..................................... TTGCTAATTTAGGCTCTTCGCTTCTGTCTGACGCTAC 31659 37 100.0 35 ..................................... GGCGCCACCAACACCGCCGGATAAAAAACTACCAA 31731 37 100.0 35 ..................................... ATACACTGACCGCAAGGAATTTGAAAGTGCGTGTA 31803 37 100.0 36 ..................................... AAAGAAGAAAGTTTCTAAGTAGACGTTATCCATGAA 31876 37 100.0 37 ..................................... TTTCCAATCATCCTTCCGATTTTAGTCTTGTCTGGAT 31950 37 100.0 34 ..................................... GACGTAAAATTCGTTATTTCGCTTGTGGCGAGTA 32021 37 100.0 34 ..................................... CTCGACCCCCCAACCTACTGATGTCGGTAATAAG 32092 37 100.0 35 ..................................... TTCCAGATTCAGAAGTTACTAGAGCGTGATGCCCG 32164 37 100.0 38 ..................................... TTCGATGATGCTACTCGTTCTTTTCAAGGCATCTATTT 32239 37 100.0 34 ..................................... GACGTAAAATTCGTTATTATGCTTGTGGCGAGTA 32310 37 100.0 37 ..................................... GCTATTTTTGATTCTGTAGCTAATGAGTACAATCCTC 32384 37 100.0 34 ..................................... GCAATCAACCTACGTTATTTAGGTATTTTAATTC 32455 37 100.0 36 ..................................... GATAAGATTTTCGTTAAATACGGAAACCGCCTCTCA 32528 37 100.0 34 ..................................... TAAGAATAGCTTGTTCGCCTAAGTGCGCCAGAGA 32599 37 100.0 34 ..................................... TTGACTGCAAGTGTGCTCGAGCTATGCCTGTTTA 32670 37 100.0 36 ..................................... CGACACCGGATACATTAGCAAATCCGGCCCTTACAC 32743 37 100.0 36 ..................................... GCGGTTGAATGTCTCTTCGCCGTTAATCTTTGTTAA 32816 37 100.0 34 ..................................... TGAAATTTGAAACAGGGTCAGGACCGTCACCCAT 32887 37 100.0 35 ..................................... TTGGCAGCTTATGGTCTTGCTTCTGATGTCCGTCG 32959 37 100.0 34 ..................................... CCAAGAAAGACAAGACTAAAATCCATAGGATGAT 33030 37 100.0 36 ..................................... ACAACAAACGTCTAATACGAACGATGTTTCCCCGCA 33103 37 100.0 35 ..................................... GACGCAACTTACTCAACAGTTGCTCAATCGTGCTC 33175 37 100.0 36 ..................................... TCAATCGTGCGATGTTAGAGACGCAACTTACTCAAC 33248 37 100.0 35 ..................................... TTCAACAAATCTTTTGTTGAGCATGGCTATATCAT 33320 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 100.0 36 GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Left flank : CTTTTTGCATGGGTTGCAAGTACCGTAGGCTTAGTCGAAAAAGGCGCTGAATTCTTATTAGCATTGTCTGATAATCCTTGGGTTCTCCTTGCGCTTATCAATATCATCCTGTTACTTGCAGGAATGCTTTTAGATGCGATTTCTATTTACTACGTCTTACTGCCCTTCCTTCTTCCATTGATCAGGCACTTCGGCTGGGACGTTGTATGGTTTGGCGTAATGATGACGGTTAACTTGGCCATCGGTCAGATTACTCCTCCCGTGGCGGTTAACTTATACGTGGGAGCTCAGATTAGCGGACTAACGATGGAAGAAATTACACCTGCGGTTATTCCTCTGCTGATAGCTGCGGTTTTGGCGTTGGTACTAATCATTTACGTACCCTGGTTCAGTACTTTCTTGCCAGCGCTTTGGGGCCTATAAACCTTCGTCATAAAGTTTTCAGTTCAAGTATGTTGTACTTTTGCTACTTGCGTCTCGAGTTTCTCCAAAGGAGAAAG # Right flank : CCCTCAGCTAATGCTATGAAATTTATAAATTTTATTTTGTGTTAGCTGAGGATTTCTTCGAAACAGTTCAAACTGCACGAAAAGTGCCATAATTTTCGAAAAATCTTATATTCACCCTCCCTATATCATCTTCAAAATATAACCCCCTATCAATCAGGAGCTCCCGCCGAGTTAGTTTTGGTTTTTAATTGAAAAGTACTCAAACTTGTCGATTTCAGCAAAATTGAATCTTTTTCTGCCCGAAGAATGAGATAGACCAGAAGTTAAGTTTCCGTTAGACATCTTTCCGAACAATAAGAAAGAATCGCTGGAACGTGACTGCAAAAGAAGTTTTCAGCTCCCAGTTTTTCGAATCGTCTTTCCTGGGAGAGCTCGGAAAGGTTCTTTCTATTTCCAGCTCTTCGACTTATCTTCAACAATGAAATTGGTGACTCTGACAGTACTGATCAACTTTTCATCTTTATTAAAGATGTCTACATTCCAGATGTGTGTTCGGCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 53968-50690 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMP01000007.1 Turicimonas muris strain YL45 NODE_7_length_107867_cov_136.54_ID_2421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 53967 37 100.0 35 ..................................... AAGGGTGAAAAGAACACCCCGATCACTATTAAGCC 53895 37 100.0 34 ..................................... CGCATAGCTTCCCGCTGTTGTTCAGCCTGTTTCT 53824 37 100.0 36 ..................................... TCATCTGCTTTATGTCCTCGGCCGTGAGCCGATTTT 53751 37 100.0 34 ..................................... ATGTCAGCGGTCTAAATATCCACATTGATGAATG 53680 37 100.0 36 ..................................... TTACCGTGGCGTGATAGATGGACTAACATCGTTTAT 53607 37 100.0 34 ..................................... TTCAATCAATCCTTGCTGGAAGCGTTTTTGTCGT 53536 37 100.0 36 ..................................... ACGGATACCTTAGCGTGGACTATTCGGCCCTCACAG 53463 37 100.0 34 ..................................... AAAAATCTCATGGCCAGAGCACAAGCCGCTCAGC 53392 37 100.0 36 ..................................... AGTGTCCAAGAATTGCCCAACGGCCGCAGGAAGATA 53319 37 100.0 35 ..................................... TATTGGCTGTCGGTTAGCTCGTTCTGCTGATGCAA 53247 37 100.0 35 ..................................... TTGAAATTCGAAATCGGGTCAGGACCATCACCAGT 53175 37 100.0 35 ..................................... CTAACGTTAAACCTAACACCCTCAAAACCAACAAC 53103 37 100.0 36 ..................................... CGTATGTGGTCTAGACGTTCTAGATTCGATTTTTAC 53030 37 100.0 35 ..................................... AGATTCGATTTTTATTGGCCGTCTCTTGCTCATTT 52958 37 100.0 36 ..................................... GCCTAATGAAAGTGCAATGTTCAAGACGTTGCCTCA 52885 37 100.0 34 ..................................... AAAATCGCAATTGAAAATAATTGCATGGTAATGA 52814 37 100.0 36 ..................................... CCACAAGAGGTGCGCTGTCTGGGCCGGGATGGGCTT 52741 37 100.0 32 ..................................... TAAAGAATGCGATCCGCTTGCGTATCTGCTGA 52672 37 100.0 34 ..................................... CGCATAGCTTCCCGCTGTTGTTCAGCCTGTTTCT 52601 37 100.0 36 ..................................... TCATCTGCTTTATGTCCTCGGCCGTGAGCCGATTTT 52528 37 100.0 34 ..................................... ATGTCAGCGGTCTAAATATCCACATTGATGAATG 52457 37 100.0 36 ..................................... TTACCGTGGCGTGATAGATGGACTAACATCGTTTAT 52384 37 100.0 34 ..................................... TTCAATCAATCCTTGCTGGAAGCGTTTTTGTCGT 52313 37 100.0 36 ..................................... ACGGATACCTTAGCGTGGACTATTCGGCCCTCACAG 52240 37 100.0 34 ..................................... CAAACAGTATTCAGCGGTTAGGAATGGACCAAAA 52169 37 100.0 37 ..................................... TCATTTGCAAGGGAAAGTGCGCTATTTAAACCAGTAC 52095 37 100.0 36 ..................................... AGTGTCCAAGAATTGCCCAACGGCCGCAGGAAGATA 52022 37 100.0 35 ..................................... TATTTAGTTCCGTTTTATGTCGATGAAGTTTTGCC 51950 37 100.0 35 ..................................... TATTGGCTGTCGGTTAGCTCGTTCTGCTGATGCAA 51878 37 100.0 35 ..................................... TTGAAATTCGAAATCGGGTCAGGACCATCACCAGT 51806 37 100.0 35 ..................................... CTAACGTTAAACCTAACACCCTCAAAACCAACAAC 51734 37 100.0 36 ..................................... CGTATGTGGTCTAGACGTTCTAGATTCGATTTTTAC 51661 37 100.0 35 ..................................... AGATTCGATTTTTATTGGCCGTCTCTTGCTCATTT 51589 37 100.0 36 ..................................... GCCTAATGAAAGTGCAATGTTCAAGACGTTGCCTCA 51516 37 100.0 34 ..................................... AAAATCGCAATTGAAAATAATTGCATGGTAATGA 51445 37 100.0 35 ..................................... CAACAGACATCGAACACTAACGATGTTTCTCCGCA 51373 37 100.0 35 ..................................... TTCGAGCATATAACCTTATTTGGAATGAGTGGTTT 51301 37 100.0 34 ..................................... TTAAATCCGATTTTGTCAGCAAACTCCGGCGGTT 51230 37 100.0 36 ..................................... TTTGAATCTTTACCTTCGGATATTCGTCTTCAGTTT 51157 37 100.0 35 ..................................... TTAACCCGTAGACGTTCCCGCAAAGTTTTCCGTAA 51085 37 100.0 36 ..................................... CTAGTAAAGGCAATCGTGCTATTACTTTTTCTTCTC 51012 37 100.0 36 ..................................... GCTAAGAAGATCAGAACGATAAGTAATAGCACCGCT 50939 37 100.0 34 ..................................... TTTTTCCTCCGCAGGCGCGAAATGATGAATGCAT 50868 37 100.0 34 ..................................... ACGGAACTTCTTCATTTTTCCGCCACAGTTGACT 50797 37 100.0 34 ..................................... ATCATCGCACGCAGCCACCCGTCAAACCAAGACC 50726 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 46 37 100.0 35 GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Left flank : AGTGGACGGGGTCTTTTTCTTCAACTCGGGAGATATTTGCCCGATCGAGTTTAAATTGGCTGAAAAAGAAGAAATAAGGAGAGCTCATGTGCTCCAGCTCTCAGCTTATGCGCTTGCACTGGAAGAAAAATATTGTAAATCTATACAACAAGGCTTCTTGGTTTTAGGGAAAAAGGGCAAAGTATTTGGCATAAGGATTGATGAGCAGAAAAGAGAAGATGTAAAGAAGTGCTTAGAGTACATCAAAGCCTCCCTTGTTGCAGGTCTATTACCTGAGAGCAGTGCAAGTGAGAGGCAATGTTGCCAATGCGAATATTTAAACTTCTGTGCAGATAGATTTTAGGGGTTTCCCTGGTTCCAATATTTAGAGGACAATAGGAGACTTTGTAAAATCGAAATAAACCCCCTTTTCCCATTTATTTAGCCCTCTTAAATTCTCTCGGGAAAGTATTATGACAACCTATGGATAGGCGACAAGTCTGCGCATTCAGGCTATCCAA # Right flank : CTCAGCTAATGCTATGAAATCTAACAATTTTATTTTGTGTTAGCTGAGGATTTTTTCGAAACACTTCAAACTGCACAAAAAGTGCCGAATTTTTCGAAAATTTTGATTTTTGGATAGATTTACCCACCCATTTTTCAATCAAAAAATCTAATTTATTTTGGTTCGGTTGATTCTTCGTTTCTAGAAATGTCAACTCCTTGTGCAGTCTTTCGTCTTTTAACTACCTAGATTTCCGTTTTACCTAATGCTGGTAGACCAGTTCTTAAATTTTTCGAAACAAAAATCTCGTCAACTCAATCAAAACAGAGTTTGTTCATAACGGCTTTACTGTTGTTGATAATCGTTCTTATTTGCAATATAATCAGCGAATTGAATAACGGAGATTCCGATGCCTCACGCAAATTTAACTCAAGTTTCATTGTGCGATGTACCTGTGAATCAGGTGTGCACTTTGGTCAAATGGGGAGCCTTGGACGAACCAACGGTTCAACGTTTGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 344759-344218 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMP01000001.1 Turicimonas muris strain YL45 NODE_1_length_735968_cov_165.306_ID_2042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 344758 37 94.6 36 ..............A............T......... TGGATTAACCTTAACCGCAATGTATCTGGCAGTCTG 344685 37 97.3 33 ..............A...................... GAGGAATGACGCTCAAAGCTATTTCTCAAAAAA 344615 37 100.0 36 ..................................... GAGCCGGGTCAACAATGTTGTTATTGTTCTTCCATG 344542 37 100.0 34 ..................................... CTTTTACGACATCGAGCATGTCTCTAATACGACT 344471 37 100.0 35 ..................................... GTATTCGCTCCCATGTATACGGACCTAAGTGCAAC 344399 37 100.0 37 ..................................... TTAAGAGAGATCTCTATTGGCTTTCTCATAACAAGTA 344325 37 100.0 34 ..................................... CTGGAAATATCACGTAAGAGTAAGTGTTAGAACG 344254 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.0 35 GTTTCAGTTGAAGGTTGTAAGTTTGTACAATTGAAAC # Left flank : TCAGGTCGACACAGGTGGTGTAATGGTGAGACTTATTCAGAAAGGCATTGGATGGAGTTTTTTAAGACCTGCAACCTTGCTTCAGCATTCAGAGTTTGTTAACAGCCTTAATATTTTGCCGATGCCCTCTCCTGTAATCACAAGAAAAATCGTGCTGATTCATAAAAAGAACAGCCATATATTTGGCTATGAAGAGATCAAGCAGAAATCAATAGAATTCTTGAACGGACAGTTCAAAAGAGATCTAACACAGCTAATTCCTTGGCTCTATAAATCTTGATTGAGTGCTAGACAAAAATGCCAAAAGCTCTCTACCAAAAAAAATGCTGTTCTTTTATTCTAACATTCAAATTGATAGAAGGTTAGAATATGTCGATTTTTATTAGAATAGCGTGTTAGAAAACAAGGTCTGCTATTCTGAATTTTGAACCCTTCAATTTAGAATTTCACTCTGAGTGAAAAAATAATTGTAACCCTCGCCAACACGGTATTTCAGTTGA # Right flank : ATTTCGAAAAATTTTATATTCACCCTCCCTCTATTACCGAGCCAAAGAAACTTCCTCCTGTCCATCCGGTACTCCCTCCGAGTTAGTTTCCTTTGGAATTGAAAAGCCCTCCCCCGCTTGTTGTTTTTCGAAAAATTGAGGAATTCTCGCTGGCGTCGTCATTGGTTCCAGCGCCATCGTCACTCGTATTTTTTTACGATGTTTTCCTGGTAGCCAGTTAAGAGATTTTTGGCAACGGTGTCAGAGTGGCAGGCTATTTTGCAAGAATTAATCTATTCCCCCTCTTCCCTGTCTGTCTTTCTTGTTATCGCTTACTCATTTTTTATGTCTTTTTCTTTGTTCAGATCAAGGTCCCATAAAAAACTGTGATAGTTGAATTTCGTGATAACGAAAAAGTTAAATACTCAACTCCGGACAAGCCAGAATCCTGAATTCCCGTTAATCTAGGTGCATATTTAACAATTTCTTGCTTTTTCTTAATAACTTGCTGATTTAGTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAGGTTGTAAGTTTGTACAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 2 404292-403754 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMP01000001.1 Turicimonas muris strain YL45 NODE_1_length_735968_cov_165.306_ID_2042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 404291 37 89.2 35 ............G.....G.....A.A.......... GAAAAATTTCTCAAAGTCTCGAAGGGCCAACTTCG 404219 37 89.2 34 .....G......G....A........A.......... GAAGAGCAAAAGAAGATATGAAACGACAACTCTC 404148 37 97.3 34 ...............C..................... TGGGAAAAATCATTGAAGAAGCGATGCGCCAAAG 404077 37 100.0 35 ..................................... TATTAAACGAGTCAGCAGAAACTTGAAAGGTAAAG 404005 37 100.0 34 ..................................... TGTTCGATGCACTGCTCATAATCTTTTTCAGAAT 403934 37 100.0 36 ..................................... TTTAACAAGTTCTTTGATTGATGAATTAATCGCAAC 403861 37 100.0 34 ..................................... AGCGTACAGCAACAGCAATAGAAGCGAAAGCCAC 403790 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 97.0 35 GTTTCAGTTGAAAGATGTAAGTTTGTGCAATTGAAAC # Left flank : CCGCCTTAAGTTAAACCATGTTATGCACAAAAAAGGAATCTAAAATGGCACGCTATCAATATCCTATGACCGTCGAGTCAAACGGAGAAGGTGGATTTATCGCCTGTTTTCGTGACGTTCCAGAGGCTGTTACCGAGTCTTGGAGCTTGGACGAATTAAAAGAAGACGCACTCGACGCACTTATTACCGCTATTGATTTTTATATTGAGGACGGAAGAAAATTCCCCGCCCCTTCTGAGTTGCAAACCGGAGATATGGCTGTTGATTTACCTGCGTCTGTAGTTGCTAAGGTTTTGCTGTTGAACACTATGGTTCAAGCCCACATAAGACCCGCTGACCTCGCACGCAAAATGCATATTAAACCGCAAGAAGTTACACGCATCACCGATATTAAGCACTCAACCAAAATAGACACATTGCAAAACGCATTTAAAGCTCTTGGAAAAGAGCTTGTACTTGAACTAAGATAAAACCGATTTATCGATATGAGCCACCTAAGC # Right flank : TCTCAGCTAACCGTATGAAATTTTTAAATTTTATTTATAGTTAGCTGAGGAATTCTTCGAAACAGTTCAAACTGCATGAAAAGTACCGAAATTTTCGAAAAATTATCTCTTTGACTTAATAACACTGAGCTCTTCATAATTTAAATCAGAAACGTAATGATTCATCCGAGCTCCCAAAAGAGATTTTTCCTTTAGCGTCGCATCGTTCAACCCCTTAGAAAATAAAAGCATCAATTTGGCAGGGAAGATACAAGGAAGCGATCTTGTCATCCTTTACAAACCGCCAAAAAATCAATAGGTTGGATAATTCCAAAACTCGAATTCGGCCTCTCATGAACTCAAAGCACAATTTAGCCGGAAAAGTAGGATTGGAAGTTCTGCGGGCCTTCCCGCCGCACCCTTGATAGCATTAACTAGAAATATTCCTACTATCGGTGTTGGAGCCGCCAATCTGCGAGAGCGTCACGCAATTCTACACAGCAAAAGTTGTCGTTTAAATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAAGATGTAAGTTTGTGCAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA //