Array 1 372-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBX01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00328 CFSAN00328_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 371 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 310 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 249 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 188 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 127 29 100.0 32 ............................. GCGAGGTCAATAAAAACTGGTGTGGCTTTACC 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-701 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBX01000029.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00328 CFSAN00328_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 64 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 186 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 247 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 308 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 369 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 430 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 491 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 552 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 613 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 674 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16960-18623 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBX01000029.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00328 CFSAN00328_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16960 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17021 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17082 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17143 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 17210 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 17271 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 17332 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 17393 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 17454 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 17515 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17576 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17637 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17698 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17759 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17820 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 17881 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17942 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 18003 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 18064 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 18125 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [18167] 18167 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18228 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18289 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18350 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18411 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18472 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18533 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18594 29 96.6 0 A............................ | A [18620] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //