Array 1 81777-80119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAD010000050.1 Salmonella enterica subsp. enterica serovar Agona str. 47.E.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 81776 29 100.0 32 ............................. GAGGCGCTGGCCGCGCTGGCCGCAGAAAAATT 81715 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 81654 29 100.0 74 ............................. AGCGAAAAAAAAGACGACGAACANNNNNNNNTGGATAAACCGCGCACCTGCCGGGACATGACCCTGCCGGAGCT 81551 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 81490 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 81429 29 100.0 32 ............................. CGCACCTGCCTGGACATGACCCTGCCGGAGCT 81368 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 81307 29 100.0 32 ............................. CTGTGTGGTTTGTGCATAACGGTGTAACAGAG 81246 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 81185 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 81124 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 81063 29 100.0 32 ............................. TTTTATAACGACACTAAAACCCGCCAGTTATA 81002 29 100.0 32 ............................. ATTTTAACGGCAAGGTCGACAGGAGATACCAC 80941 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 80880 29 96.6 71 ............................A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 80780 29 41.4 32 NNNNNNNNNNNNNNNNN............ GCTAAAGCGGCGCTTGAGAACAGTATCAATAT 80719 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 80658 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 80597 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAT 80536 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 80475 29 96.6 54 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCAGAAACCGGATATGAGCCATCCAT 80392 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 80331 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 80270 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 80209 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 80148 29 93.1 0 A...........T................ | A [80121] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 97.2 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGTTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 98722-98063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAD010000050.1 Salmonella enterica subsp. enterica serovar Agona str. 47.E.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 98721 29 100.0 32 ............................. GCGACTGGCTGGTCAGCACGCCGTTAGTCGCC 98660 29 100.0 32 ............................. AAATTGTCTGATAGATTGGCAAAAGCGATGGA 98599 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 98538 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 98477 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 98416 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 98355 29 100.0 53 ............................. GTTAAGGGGGAGTTTAAGCCGATTAAGGAGGAGTGAGATGCAGATAAAAACGA 98273 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 98212 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 98151 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 98090 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ===================================================== ================== 11 29 98.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //