Array 1 873114-873683 **** Predicted by CRISPRDetect 2.4 *** >NC_017634.1 Escherichia coli O83:H1 str. NRG 857C, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 873114 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 873174 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 873234 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 873294 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 873354 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 873414 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 873474 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 873534 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 873594 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 873654 28 85.7 0 ....................A...C.CT | T,C [873674,873678] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 882741-884030 **** Predicted by CRISPRDetect 2.4 *** >NC_017634.1 Escherichia coli O83:H1 str. NRG 857C, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 882741 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 882801 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 882861 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 882921 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 882981 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 883041 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 883101 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 883162 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 883222 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 883282 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 883342 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 883402 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 883462 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 883522 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 883582 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 883642 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 883703 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 883763 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 883823 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 883883 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 883943 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 884003 27 92.9 0 .......................-C... | T [884023] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //