Array 1 427503-428628 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTA01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 40 NODE_2_length_697188_cov_13.2885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427503 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 427564 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 427625 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 427686 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 427747 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 427808 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 427869 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 427930 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 427991 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 428052 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 428113 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 428174 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 428235 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 428296 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428357 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428418 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 428479 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428540 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 428601 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444887-446993 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTA01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 40 NODE_2_length_697188_cov_13.2885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 444887 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 444948 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 445009 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 445070 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 445132 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 445193 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 445254 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445315 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 445376 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445437 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 445498 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 445559 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 445620 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 445681 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 445742 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 445803 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 445865 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 445926 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 445988 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 446049 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 446110 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 446171 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 446232 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 446293 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 446354 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446415 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 446476 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 446537 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 446598 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 446659 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 446720 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 446781 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 446842 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 446903 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 446964 29 89.7 0 A...........TC............... | A [446990] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //