Array 1 983-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBY01000003.1 Salmonella enterica strain BCW_2524 NODE_3_length_400303_cov_4.14784, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 982 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 921 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 860 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 799 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 738 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 677 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 616 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 555 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 494 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 372 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 311 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 250 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 189 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 128 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBY01000037.1 Salmonella enterica strain BCW_2524 NODE_37_length_28462_cov_3.96423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 114 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 175 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 236 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 297 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 358 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 420 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 481 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 542 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 603 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 664 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 725 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 786 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 847 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 908 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCCGATCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17047-18523 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBY01000037.1 Salmonella enterica strain BCW_2524 NODE_37_length_28462_cov_3.96423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17047 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17108 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17170 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17231 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17292 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17353 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17414 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17475 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17536 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17597 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17658 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17719 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17780 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17842 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17945 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18006 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18067 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18128 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18189 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18250 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18311 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18372 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18433 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18494 29 96.6 0 A............................ | A [18520] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //