Array 1 10163-12835 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABT01000005.1 Pectobacterium parmentieri strain NY1712A NODE_5_length_197268_cov_12.1708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10163 28 96.4 32 .............C.............. AGCCACGCATCCAGATACATCGGGCAGTCAGG 10223 28 96.4 32 .............C.............. CAGATCACGGCGGTTTTGTTCTTGCGCCATGT 10283 28 96.4 32 .............C.............. AATTCCACTGGAAAAACTGACAGCATTTACAA 10343 28 96.4 32 .............C.............. TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC 10403 28 96.4 32 .............C.............. CGTCATCAACATCTACGCCGACGGTTCATTTA 10463 28 96.4 32 .............C.............. TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA 10523 28 96.4 32 .............C.............. CGTTTGCGGATTTTTTCATTGCATCGCTGACA 10583 28 96.4 32 .............C.............. GTCCGGACGGCAATCATTTTAGCATCGAGCAC 10643 28 96.4 32 .............C.............. ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT 10703 28 96.4 32 .............C.............. AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA 10763 28 96.4 33 .............C.............. CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA 10824 28 96.4 32 .............C.............. TGCTAACGCGGAAATTTGACCGAATGAGGGGG 10884 28 96.4 32 .............C.............. ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC 10944 28 96.4 32 .............C.............. GATTGACATACGCACAGGCTGTTTACTGGATT 11004 28 96.4 33 .............C.............. CACCGACAGACAGATTATCCGGCAGACTGGTGA 11065 28 96.4 32 .............C.............. ACGAAACAATAAACCCATTAATGGTATAAGTT 11125 28 96.4 32 .............C.............. CATGTCATTTTCACCTGAGCGTTAGCATTGTT 11185 28 100.0 32 ............................ TACGCGATGACGCTGCCCGATAGTGCCGCGTT 11245 28 100.0 32 ............................ GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG 11305 28 100.0 32 ............................ GCTGCGACGCCTCGGCAGCCGACACCCGCATC 11365 28 100.0 32 ............................ GAAGTCACGCTGGAGTTTGACGATCTGCCCGA 11425 28 100.0 32 ............................ AGCTTGTGCGCGATGGCATAGCGGGCAATCTC 11485 28 100.0 32 ............................ GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC 11545 28 100.0 32 ............................ GCAGATACGAATACCAACTTGACCCACTACTA 11605 28 100.0 33 ............................ CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG 11666 28 100.0 32 ............................ AAGGTGCCGAGCCTCTTGACCGATAATGACTT 11726 28 100.0 32 ............................ CGCTAACGTGGGGAAATATGACTCAGTCGTCC 11786 28 100.0 32 ............................ AATCCCATAAAACAAAAGCCCCTGCATTTCTG 11846 28 100.0 32 ............................ AGTGAATACCACGCCACCGACAGGTGGTTTTT 11906 28 100.0 32 ............................ TAGGCGCTTGCTGGCATCCGGCACGTTAAATA 11966 28 100.0 32 ............................ TTCAATTCGCCGACTTATTAGAGCTAACGGAA 12026 28 100.0 32 ............................ AATATTAATACAGGACAACCGACATATATCAA 12086 28 100.0 32 ............................ TGTGATGTAATAACTGAGTCCGGTCACGGCGA 12146 28 100.0 32 ............................ AGATACCGAGCCCCTTGACTGCAATTTAGTGC 12206 28 100.0 32 ............................ AGAAATACCCTATGTCATTCTGGATAAATCAA 12266 28 100.0 32 ............................ CTGGTCGAATAGCAGGGATAACCGGCAATGTC 12326 28 100.0 32 ............................ AGACAAAGATTATTGCCTGATATTCGATCACT 12386 28 100.0 32 ............................ GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC 12446 28 96.4 32 .............C.............. CAAATCGGCGTTCGACTCCCACGCATCGGTTT 12506 28 100.0 32 ............................ ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG 12566 28 100.0 32 ............................ TGTACTCACGCCCACGATCATCATTGTACAAA 12626 28 96.4 34 .............C.............. GGCGCGACCGTGTTCTAGACGATTTACGGGACAC 12688 28 96.4 32 .............C.............. TCTAGCCAGTTATGAATTTCAACCGACTTTGA 12748 28 96.4 32 .............C.............. GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 12808 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================== ================== 45 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36477-37420 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABT01000027.1 Pectobacterium parmentieri strain NY1712A NODE_27_length_68505_cov_12.4269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36477 29 100.0 32 ............................. CCGATTCAAGGGCAGATGCGCGGTCTATTGTT 36538 29 100.0 32 ............................. CATTTCAGACCCGAATTTAAGAGCCGCTTGGT 36599 29 100.0 32 ............................. TTGTATGCAATTAGCGACCCGTAAAACCCGCC 36660 29 100.0 32 ............................. GGCTTCACATGGCACAAAACAAATCGGCGCAA 36721 29 100.0 32 ............................. TAAAACGAAATGGAATACAAGGAAATGGGATG 36782 29 100.0 32 ............................. GATGAGCAAATGGAAACGATCAACTATAACGG 36843 29 100.0 32 ............................. AATTACCAGATGAGGCGTATGAGTATGGGGAT 36904 29 100.0 32 ............................. ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG 36965 29 100.0 32 ............................. TCGTCGATTCAATGAAGGCGTATGGCGGAATC 37026 29 100.0 32 ............................. GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG 37087 29 100.0 32 ............................. AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT 37148 29 100.0 32 ............................. TTATTTAGTGGAATTCGGCCTGACGCCAGCGG 37209 29 100.0 32 ............................. CCAATGGCACCGGGGATAGATGTAATATCAGA 37270 29 100.0 32 ............................. CCACTCTGCGCCGCATTGGTGCTAATACAGAT 37331 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 37392 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGAGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39290-39562 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABT01000027.1 Pectobacterium parmentieri strain NY1712A NODE_27_length_68505_cov_12.4269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39290 29 100.0 32 ............................. CATGGATAAGAGCGACGTAGGAACGCAATTTG 39351 29 100.0 32 ............................. CTATCGTTTGCGAACGTGCATCCTTGCCCGTA 39412 29 100.0 32 ............................. CGTTACTACGCAGTGATGGGAATATTTCTGGC 39473 29 100.0 32 ............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC 39534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGG # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5510-5241 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABT01000014.1 Pectobacterium parmentieri strain NY1712A NODE_14_length_121899_cov_12.1748, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5509 28 100.0 32 ............................ AACATCGCCACGGCGAAAAGTGTGTTCATGGC 5449 28 100.0 32 ............................ TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA 5389 28 100.0 32 ............................ ATCTACGAAGCTGATTATTGGTATGGGCCGCG 5329 28 100.0 32 ............................ TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT 5269 28 89.3 0 ............GC..........A... | G [5243] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : CAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //