Array 1 64958-63890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMZ01000027.1 Escherichia coli strain JML029 sequence027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 64957 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 64896 29 100.0 32 ............................. TCTTTAATTCGACTTTATTGACCATTTAAAAC 64835 29 100.0 32 ............................. GCTATTTGCAATTTGCTCAGCTGAATCACACA 64774 29 100.0 32 ............................. CCGCACACCAGGGCGTCTCATCGTCTTTAATT 64713 29 100.0 32 ............................. GGGCAAGCGACAGTCTGAACGACGCGGCGGGG 64652 29 100.0 32 ............................. TTGTGAATTTTTGCACTACATCAGGTGTGGTC 64591 29 100.0 32 ............................. TCGCCCGAAAAACAGCTTGAATCTTATATCGC 64530 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 64469 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 64408 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 64347 29 100.0 32 ............................. CGACATAAAAACGTCCGGAGGCGCGTACTACC 64286 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 64225 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 64164 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 64101 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64040 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 63979 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63918 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43841-45089 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMZ01000082.1 Escherichia coli strain JML029 sequence082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43841 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 43902 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 43963 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 44024 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 44085 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 44146 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 44207 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 44268 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 44329 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 44390 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44451 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44512 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44573 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44634 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 44695 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 44756 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 44817 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 44878 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 44939 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45000 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45061 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //