Array 1 153078-155451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPR01000002.1 Serratia marcescens strain 630 NODE_2_length_392534_cov_3.41075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153078 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 153138 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 153198 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 153258 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 153318 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 153378 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 153438 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 153498 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 153558 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 153618 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 153678 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 153739 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 153799 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 153859 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 153919 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 153979 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 154039 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 154099 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 154159 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 154219 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 154279 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 154340 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 154400 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 154460 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 154520 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 154580 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 154640 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 154700 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 154760 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 154820 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 154880 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 154940 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 155001 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 155061 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 155121 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 155181 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 155241 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 155301 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 155361 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 155421 28 96.4 0 ....................A....... | A,A,G [155441,155444,155447] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCCCCCTTTTTTTATTTTTCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 164301-168337 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPR01000002.1 Serratia marcescens strain 630 NODE_2_length_392534_cov_3.41075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 164301 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 164361 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 164421 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 164481 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 164541 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 164601 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 164661 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 164721 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 164781 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 164841 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 164901 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 164961 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 165021 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 165081 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 165141 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 165201 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 165261 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 165321 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 165381 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 165441 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 165501 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 165561 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 165621 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 165681 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 165742 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 165802 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 165862 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 165922 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 165982 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 166042 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 166103 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 166163 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 166223 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [166270] 166270 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [166275] 166331 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 166391 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 166451 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 166511 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 166571 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 166631 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 166691 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 166751 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 166811 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 166871 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 166931 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 166991 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 167051 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 167111 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 167171 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 167231 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 167291 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 167351 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 167411 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 167471 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 167531 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 167591 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 167651 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 167711 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 167771 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 167831 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 167891 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 167951 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 168011 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 168071 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 168131 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 168191 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 168251 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 168311 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //