Array 1 577799-578619 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIN01000001.1 Klebsiella pneumoniae strain TUM14060 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 577799 28 100.0 33 ............................ TTTTTCGAGCTCGTCGTCGTGTGCCTGTGCCTG 577860 28 100.0 33 ............................ CATCACTACGGCCTGAGACTGCGCCCGGGATTG 577921 28 100.0 33 ............................ CGTATCGGCTGAGTTTGACAGGCTGACAGCCAG 577982 28 100.0 33 ............................ TGACTTCAGGCGCGCAATGTCGGCCTTGCGGAA 578043 28 100.0 33 ............................ CTCACCGGCGCGCTGGCCAAAACAAAAATTGAT 578104 28 100.0 33 ............................ CTGACCTCCCTGCTGATGTGGCGCAAGAGTGTC 578165 28 100.0 33 ............................ CCCTCGTTTGAGCGAACGCCTTTTTTGGAGCAA 578226 28 100.0 33 ............................ CCGCTTTCCAGTCACGCAGTGATTTGATGGTTT 578287 28 100.0 33 ............................ CACCTTTCCTTCATTCGCTCCCTTCTCAGGGCC 578348 28 100.0 33 ............................ TTAGCAAGTCGGCGGACGTCATCGGATGCTCAC 578409 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 578470 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 578531 28 96.4 33 ..............T............. TTCATCATGTGTGAGCGGATTTGGCTCTATCCT 578592 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGACGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGACGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 587373-588806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIN01000001.1 Klebsiella pneumoniae strain TUM14060 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 587373 28 100.0 33 ............................ CCTGGCCGTCACGGTGCATCTGCCACAGGGAGG 587434 28 100.0 33 ............................ TGAGCATGGGTGGCCAGCTGACGCGATTGAAAA 587495 28 100.0 33 ............................ TGCTGCTTTCCATGTTGCGCTGGTAACCTGCGC 587556 28 100.0 33 ............................ CCGTTGGTTCTGCTGGAGTCTTTGTAGTTTCAA 587617 28 100.0 33 ............................ CGCGTTCAAGCGGGAAGTTCCAGCCGAACGCGT 587678 28 100.0 33 ............................ CTTTCTTCCACGGCACCTCTGAAGATTCAGCGA 587739 28 100.0 33 ............................ CCAGAACCATGCCCCCGTGGTGGACATTGGTGG 587800 28 100.0 33 ............................ CCATGCGCACCTCTGCTGGCCATACTGTTTCCT 587861 28 100.0 33 ............................ TAGCTTTTAAGGGGAATAAAAAGCCCCCGGGCG 587922 28 100.0 33 ............................ TTCGTCGCCCTTTTAGCCGCTTGTGTTCTTGCC 587983 28 100.0 33 ............................ TCGGGTTTTTCGATACAGGTGTCTCTCGCGACC 588044 28 100.0 33 ............................ TACTCGCGATTTTCGACGGCCCCCGTAGACCCC 588105 28 100.0 33 ............................ TCCAACGACGATCTGGTGTAAGCCATGACGTTC 588166 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 588227 28 100.0 33 ............................ CTGATGGAGGAGCAAAAACGCTACAACATGGTC 588288 28 100.0 33 ............................ TTGAGACGACCGGCGAAACCCCGTCATTCGTGT 588349 28 100.0 33 ............................ CGCCAAGTGGAAGCCGGTTTACCGCGTGACCTT 588410 28 100.0 33 ............................ CTCTTTTGTCTCTATCCCTGTCTACTGGGTTTT 588471 28 100.0 33 ............................ CTCTTTTGTCTCTATCCCTGTCTACTGGGTTTT 588532 28 100.0 33 ............................ CGACTGGATCACGTACCTGATCAGCGTAGTGGT 588593 28 100.0 33 ............................ CACTGGGGTAACTGGGCATTCAGCCCGGCCGAG 588654 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 588715 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 588779 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 24 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAAGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTAGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAAGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //