Array 1 3417467-3417907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079112.1 Streptomyces albidoflavus strain LGO-A16 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3417467 29 100.0 32 ............................. CAGCATGAGGTGAGCGTATGGGCAGGTGCGGG 3417528 29 100.0 17 ............................. CTCGCGGGGTTCCTCCT Deletion [3417574] 3417574 29 100.0 32 ............................. GACCCCGTCACGTACGGCGAGCACCTCAGCAC 3417635 29 89.7 32 G...G.............G.......... TCCGGCGATCACGGTGACGGTCCCACAAGCTG 3417696 29 86.2 32 G...G...T.........G.......... TACGCCTACCAGACGATCTGGGACAACTGCGT 3417757 29 82.8 32 G...G..........C..G.........A CGAGGCACGGCAGTGGGAGAGGTTCTTCGACT 3417818 29 82.8 32 G...G.............G.C.......T ACGACCGTCAACATGGCGACCCTGGTCCGACG 3417879 29 69.0 0 G.C.G.....A.AAG...C.A........ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 88.8 30 ATGCCGCCCGGGCGCGCAAGGGGTGACCG # Left flank : GCGGCACGATGGACAAGCCGGGTCGCAAGGTCCGGCAGAAGGCCGGGCTTAACCGCGCGATCCTCGACGCCTCCATGGCCGAGGCCCGCCGGCAGATCACCTACAAGACTTCCTGGTACGGCTCCCGCCTCGCGGTCCTCGACCGCTGGTGGCCCTCCAGCAAGACCTGCTCGGCGTGCGGGTGGCAAAACCCAAGCCTCACGCTCGCCGACCGGGTATTCGAGTGCGCTCAGTGCGGACTCACCCTGGACCGCGACCTCAACGCGGCCCGCAACATCGAGCAGCACGCAACACAGGTCGCCTCCGGTACGGGGGAGACCCAAAACGCCCGTGGAGAACCCGTCAGACTCCCCCGCCCCCGGGCGGAGAAGCAGGGCTCGACGAAGCGGGAAGACACCGGCCCTCCCGGGCCGGTGCCACCTCGGCGGAGCAATCCGCCGACACCCCCCAACCCGCGCCAAGGACAGGCAAAGCTGTTCTAACGTCCCAGGTCAGGAAGT # Right flank : GCGGCGGCCTGGAAGTCCGGCCGGCCCGGCATCAACAGCAATTCAGAGCTGAACAATCACGTCGGATAGTCACCGAGCGAGCGACATAGAACACGTGGAGCACAAACCCCCCGCCCGCAGCAGTTCGGGGCAGGGGGTACGTGGGTTGAGCAGTCAGGCGAGCGGGGCGTTCTTTGCTTCGGTTACGAAGTTCGCCCACGCCGCCGCCGGGAAGACGAAGGCCCCCCTGCTGCGGTCCTTGGAGTCGCCGACCGCGACGCTGCCCTCCGGCATCGCCTGGATCTCGATGCACTGCCCGCCAGTGTCGCCGCTGTACGACGACTTCTTCCACGCTTCGGCCGGGAGATCATGCCGCATCATCAGGTGAGCCTCTTACTCGTTCTCAAGACCGTGCGCGAGGCGCTCGATCACGTGCATGGACTCTCGCGAAGATAGAGCGGCGGAGCGCAGGTGGTCAAAGGCTGAGCGGTACCGCTCGACAGCACTACTCTCCTCCAGGT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCCGCCCGGGCGCGCAAGGGGTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGGCCCGGGCGCGCAGGGGGTGACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3706231-3705047 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079112.1 Streptomyces albidoflavus strain LGO-A16 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3706230 28 100.0 33 ............................ GATGGTCGACCGGTTCGACGCCCGGGCCTCCGA 3706169 28 100.0 33 ............................ GGCGACCCTCACGGTGCCGGACGTGGTGGCGGA 3706108 28 100.0 33 ............................ GGACCGGTGGGAGGACGTCCTGGGCGTCGAGGA 3706047 28 100.0 33 ............................ GGAGCACTGCCGCGAGGGTCATGCGGAGCGGGA 3705986 27 96.4 33 .................-.......... GGCTATGACCTCCCCAAAGCTGAACTGGCCCGT 3705926 28 100.0 33 ............................ GAAGCGGGCCGCCTCGTGACGCAGCCGATGACG 3705865 28 100.0 33 ............................ GGAGACGCGGGGGGCGATGGAGTCCAGGTCGAT 3705804 28 100.0 33 ............................ GACGCCAGGGTGGGTCGGGGTGTCCATGAATCC 3705743 28 100.0 33 ............................ GTGAACTCCTCCCCGCTCGCGATGTGCTTCCCC 3705682 28 100.0 33 ............................ GACCCTGACCGTCGCCGCCGCCGTCAACGGCGC 3705621 28 100.0 33 ............................ GGCCGAGGCCAACGCCGCCTCGGCCGCGATGAT 3705560 28 100.0 33 ............................ GCCGCAGCTCTCCGACCTGCGCGAGAGCGGGGC 3705499 28 92.9 33 ......GT.................... GACACCGCGCGAATGCGTTTCCGCCCTCGCTGA 3705438 28 100.0 33 ............................ GCCGGACAGGTCAATTTTCAATTCCCGGGGGAG 3705377 28 100.0 33 ............................ GCGCTATGCCGGTGCACCCGGGCCGCCGCGCCC 3705316 28 96.4 33 ....................C....... GTCGGTTTCGACGGTGGTGCGGTGCACGGCGAG 3705255 28 100.0 33 ............................ GTCGTCGCCCGGGTCGAGCGGGAGGACGGCATC 3705194 28 100.0 33 ............................ GACGTGCACGGCCCAGGCGACGGACGCGCGGTC 3705133 27 96.4 33 .....................-...... GGTCAGCCTGGTAAAGCGGGCGGCGCCTGCCCG 3705073 27 78.6 0 ...........A...A.C...-..GC.. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTGCTCAAGGCCGAACGCCCCGAAGAACTCTTCACGGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGCTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACCCCGAGGGAGCGAGACATTCTGCGGCACCTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGCGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGTGGTTGGCGGGGGTGGGTTCGTGGATTGGGGGGGTGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGGTTGAGAGAGGGGGCGGTGATGAGCAAAGGGATGGCAAAGTCAGTCTGAAGGTGCAGGTGAGAAAGG # Right flank : CAGGAACCGATGCAAGGCCGGTGCGGCAGGCAAGTGATGCCCGCAGGCGCAAGGACTGCCCATTGCCGAACGAGTGACGTTCCCAGGTTGGCCGCTGATGTCCAGCCGCCGCAAATCCGGCGGCCAAATGGCAGCGCGAGTACTAGCCACCGCCCCCGACGCCCCTCTCCACCTCCCCCAAAGCCTCCCCCCACCCAAACCCAGCCGCATCCCCCCGCTTAGGCAAATGCGGCTCCCCCTCGGTGAAGACCACCCGCACCCCCTGCCCCCGCAAGGTCTCCACCGCCCGCCCCACCGCAGGCTGCGCCCCCAGCGCCGTGGACCAGAACGGCGCCGCGACCACCGGCACACCGAGATGTACGGCCTCGGCCGGCACCCCCAACGCCACCGTGTCCGTGATCCCGGCCGCCCACTTGCACGCGGACGTGGTGGTGAGCGGCGCGACGAGCATCGCGTCCGCCTTGGGCAGCCCGCCGGACTGGCCGGGCAGGGTGTACCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4161551-4161331 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079112.1 Streptomyces albidoflavus strain LGO-A16 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 4161550 27 100.0 34 ........................... CCCGTGCGGCGACCGCCACTGCACGACCTGCTGG 4161489 27 100.0 34 ........................... CCGGCTGTGGGCGCCGGGCGCGCGGATGCTCGCC 4161428 27 100.0 40 ........................... CCTTCTCCCGGTCGCTGGGCTTGGGCTTCTTCTTCTGCTG 4161361 27 96.3 0 .................A......... | T,GGC [4161332,4161348] ========== ====== ====== ====== =========================== ======================================== ================== 4 27 99.1 36 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : TGGACGACGGGCTCGCGATGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCACCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACCGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGGGGATTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTTGGCTCGGGTGAGGGTGAGGAGTGGGTCGGGGTGTGAGTGGCTGGAAGGGGGGCGCGGGAGATCTGTCGGGTTCAATGGGGGCGGGTGCTGGGTGGACACCACGGAGGGGATATGAGGCATTCGCCCGCATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : CCTCCCGGACCCCGAGCATGCGACCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCTCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCTGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGGAGCGAGGCGTGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCGGCCCGTGCCCCCGCGTCCAGGTGGGCCGTGGGCTCGTCCAGAAGCAGCAATGGCGTAGGTGTCAGCCAAGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGATCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGGGGGGTCAGGGTGAAGGTGTGGATGGCTTCCGTGATGCGAGGGGCCGGGGCGTTCGGGGCGAGGTAGGTGAGGTTGTC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7039646-7039313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079112.1 Streptomyces albidoflavus strain LGO-A16 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7039645 28 100.0 33 ............................ GCGATCGTCGTGCGGCGCGGACTGCTCGGCTCC 7039584 28 100.0 33 ............................ GTAGTTGTTGGCGTTCATGGTGCTCCTTAGGCG 7039523 28 100.0 33 ............................ TCGAGTCCGGGGAGTACCCGCGCGGCTCGATAC 7039462 28 100.0 33 ............................ GAACCGCCCTCAGCTCGCCCCCGCCCAGATCGC 7039401 28 100.0 33 ............................ CCTGCCCCTCGTCGCTCCGGACCGGCACCCCCG 7039340 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GCTGCGCGGCATGGGAGTGAGCGTGCTGTACGGGGAGGGCGGGTTCCAGCCGAATCCACCCGGCGAAGGCAGCGACTTCCCATGGCGCCTCGCCCTCGACGAGGTCGAGCGCGCTGTCGGCGCGGGGCGCTAGCCTGCCCCCATGTCCTCCCTGCCTGCTGCCCGGCCGCGTCCTGCGTCGGTGGTGAACGCGGAGATCCGCGCGCTGATGCTGCGCTCGGGCGGCCGCCTGGCTGCCGGAGACAGGGCCCGGTACGTAGCGCTGATCGCGGAGTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCGCCGCCGACGCGGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACAAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCA # Right flank : GGAGCAGCTGGCCCAGGGAATCCTCCGCGAGCAGGATCAGCACCTTCCGGTCCCCGACCGTGCCAGTAAGGTCCAGCAGCTCACCGACACCGTCCTCCTGCACGCGCACCGCCTCCAGCACGACCCCATGGTCCGGGCCGGGGTACGGCTCTCACTGGACCGGGAAGCGCAAGAGGTCAACCGTCAGGGAGCCTTCACGCACTGGGGAACCGTCATCCGGGAACTCCTCGAACAGGCCGAGGCGCAAGGGGAACTCCTCCCCCACATCCACGTCGCCCAGACAGCCGACGTCCTGGTCGGCTCCTTCGCCGGCGTACAGGCCATGTCGCAGGTCCTGAGCGACTACCAGGACATCCTCACTCGGGTGACCGCCCTGCTGCACCACATCCTCCCCAGTACCGTCCTTCCGCCCATCCTCGCCACGACCGAGATCACCCCCGCCCGTGCCCCAGGCCGTCGCCCACGAACTGCGTCAGGACAGCACACACCACCACCCCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7043006-7042342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079112.1 Streptomyces albidoflavus strain LGO-A16 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 7043005 28 100.0 34 ............................ CTCCGCGTCCACGGGGCGTACAGCGTCGAGGCCG 7042943 28 100.0 33 ............................ GCCCTGTTTCATGCGCCGCACGTCGGCCAGCGC 7042882 28 100.0 33 ............................ GATCTCGCGGCATCCCGCGACCTGGCCTTGGTG 7042821 28 96.4 33 .....G...................... GCGGCTCCGGCGCGGCCCCGCCGTCCCCCCGCA 7042760 28 100.0 34 ............................ GAGAGCGCCCTTGAGTCCCTCCATCACTTCTCAC 7042698 28 100.0 33 ............................ TGCATGAGCTGTGACCGATCCGGCCGTGTCGGC 7042637 28 100.0 33 ............................ CCGGCTGGTCGACGCCTACATCCGCGACGGCAT 7042576 28 100.0 33 ............................ CTGGACCCACTCAGCAACCACCACTGCTAGGTC 7042515 28 100.0 33 ............................ GCCGGGGCCGTGGGGCTGGTCGCTGACGATGGT 7042454 28 96.4 57 .............T.............. CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 7042369 28 85.7 0 ....................C.A..G.G | ========== ====== ====== ====== ============================ ========================================================= ================== 11 28 98.0 36 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGAGCCGGACCACCGGACACCTCATCCAGCAGGCCCCGCGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCAGCGGCGGTCTCCGGGCTGCACAGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGCGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCACCCCGAGGTCCACGGCCGTGGCGGTATCGAGGCGCCCGGCGCACCACACGCACTCGGTGCCCCGGAGCTGCAGCTCACCGAGAGCGGTCGGCTGCGGTAACTCCTGCACTGTCGTCGCCATGGTCATCCCCTGCTGTCCGATCGAGATCAGCAGGATGGCGCGCGGCCGAGGCCGGAACGCTTACAGATCTGTGAGCGTTACACCCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 7053330-7053602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079112.1 Streptomyces albidoflavus strain LGO-A16 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7053330 29 100.0 32 ............................. CGCTGGGCGAGCAGCTCGTAGACGGCGCGGAC 7053391 29 100.0 32 ............................. AACGAGTGCGCCGCCCAGGGGCGGCAGAAGGA 7053452 29 96.6 32 ............................T CGTGAGGGCCGTCCACGCCTTGGACCACATGA 7053513 29 96.6 32 ...........A................. CTGATCGCGCACCTCGCGGAGCGCGGACTCGT 7053574 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTATGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAACGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : ACTGGCAGGAAATCTTCCCCGAAGGCCGCGGACTCAGCCAGGTAAAAGCCAAAAACACCTACACGCTGGGAGGAAATGAGTGAGCGGCGCAAGCGACCTGTGGGGAGAATTCGGCAAACACCACGCACAAGGCCAGAAAGGCGCACAAGCACTCGGCCAGGAGATCGAACGCATCGCCCGCCAGGGCGGCATCACCTCACCCGTGACCACCACCCGCGGCCTGCGCGCACGCCTGCGCTATCTCGACAGCCCAGCTGGCCGCCGGGCCCTCGCCGAGCACGGCGTCTCCAGCCGTCTGCTCCGCGCCTGGGCGGCCGGCCGCACTCCCAGCCGGGCGAAGCTGGCGGCTGTCGATGCCGCGTACTGGGGTCGCCGCCGAGAGAATCTGGTCCGGTCGGGTGCGCTTAAGCGGCTCCTTGACAACGAGGGCAGGGGCCGCCGCATCGAGATCTATCCTGTGGACCAATCAGCGGTGCCGGAGAAGCGGAAGCGGGTCATCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //