Array 1 45086-45634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCS010000027.1 Prevotella jejuni strain SCHI0011.S.13 Contig_27_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 45086 37 94.6 38 A..............A..................... AAGTAGCATTCAATCAAGAAGAGTACACGTATTCACTG C [45089] 45162 37 100.0 40 ..................................... AGAGTGCCGAGAAATTGGATAATGACATCTATGATACGCT 45239 37 100.0 37 ..................................... AAGGCAGGAAACGTACCTAATCAGATACAGGCTTTTC 45313 37 100.0 33 ..................................... TCTTGGAATTGCAGACGCTCTCAACGAATCTGT 45383 37 100.0 36 ..................................... ATTTACGTATTATCCAGAATCAATACTATAATATCT 45456 37 100.0 34 ..................................... GCCTGTATGTATGCAGCTGAAAATTAACAGTGAA 45527 37 100.0 34 ..................................... CTATTATGAATATCAAAAAAGTGAAAGATTTTGG 45598 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.0 36 GTCTTAATCCTTGTTCTAATGGAAGATACTCTCGGAG # Left flank : CTATATGATTTACTTGAAATGCATAATTACATACAGAAGCTAATACTTTAGCATACAATACACAATGAGCATTAGTTTCCTTCTTGAATGTAACTGGGCTACATTTGTCAGAAAACTTTAATGTCTCAGCAGTTAGCTCAATACTATAATCAATTATCTCATCTTTAGACATGTTTTTTGTCTTAGACTTAATAATTTCTTTCTGAAACTTTGGAATAGTTATTGAACCATCTCTATTATGGCTTTTTACTAATCCCAAACGAAGGAAAGGAATAACCAAACTTATTAGTAAAATAGTAATTAATCCTCTTTTGAGTAATTTATTTTTAACTCCTATATTAATTAAGTAGATAATAACATATAATACTAATACTACTATTATTAATAAAGGTACTAAAAATAAAAAACTCCATCCAAAATCACCATAGTGTTGAAATGAATAATCTAATTGTTCACCCATAATATAATTGTTATTGTTGTTTATATTTTCTTGATTTAAT # Right flank : AGGTTAGGTGCGTGAAGGCTTTGTTTTAGGCAGGGGGAGAGTAGTAAGACTTATAAATCCGGGGCTTGTTAACAGAAATTAACTACGTTCTAAGCGGGTGCAAAGGTAGTTATTTTTTTGCAAAATGTCAAGGAGCGAAGGGGTAAATAACGCTAATCAGGAGAGGAAAAACTTATAAGTTCGTTCCTACCTGATGTTTCCAGAAGCGGGAGGTGATATCCTCGAAGGAGCCATCTGGGCATCGGCGGTACATCCGCTGATTGGTGCGTGGGGAGTCGAGGGCACCGAGATGGCGGAGATAGGGCCCCACTTTGATATAGTCGAAACGCTGCTGGTCGATGAGTGGGGAGATTGCTGTGCGCCCAGTGTACCAGCCAACTTTCAGTCCTTCGTGGTTCTGTCGCACGTGTTCAGCGAGCCTGTCGACCTCAGCAGGGTCGCCATCGCCCCCCATAAATCCCACACATGTTATCGTGTCTTTCGCTTCATGAATCAGTGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTCTAATGGAAGATACTCTCGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 114301-113776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCS010000002.1 Prevotella jejuni strain SCHI0011.S.13 Contig_2_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 114300 42 92.9 27 ......CG.G................................ GACAATTTCCGACCATGCTTTCGGCGG 114231 42 100.0 27 .......................................... GACAATTGGATACATGGCTTTCGGCGG 114162 42 100.0 27 .......................................... GACAATTTCCGACCATGCTTTCGGCGG 114093 42 100.0 27 .......................................... AAAAATTGGCGGAAGTGCTTTCTTTCT 114024 42 90.5 27 ....GT.........C..............G........... AGAAATTGGCGGCAATACTTTCTACAA 113955 42 100.0 27 .......................................... AAAAATTGGAGAGGATGCTTTCAGCCG 113886 42 88.1 27 .....TCGAG................................ AGAAATTGGCGACGGTACTTTCTCAGA 113817 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.4 27 TTGTAGATCTCTAACTTCTGTAACCATTCCAAATAGTGTTAC # Left flank : CAGAAAAGAATTCTATTGTTAGAGGATAAATTTCGAGAAAACACATAGTACCGAAGCAAGATTATTTGGTTCAATGAAGGTGGAATTAGGTGGAGGCTACCTGGTGGTACTTATGAGATGCCATCTCTCAATAATAACTATCTTGAAAAAAGAAGCAAAATGCTACATAAACTTTTTATAAAAAAACAATTTATAATAAATTTTGTTTATCTTTGCATTTGAACTTCCATAAATCAAAAATATTATTTATATAAAAGTACTAATATGAAACAAATTGACACCTTATTAATAGACCTACTCATGGACTTATTAGCTAATGCCGAGAATTCTGGTACTTGTGGACCTAATCTAAGATGGCTCCTTACTGATAATGGCGTTTTGGTCATTACAGGAAAAGGGAAAATGGATAATTATTATGATGGTGGACCATGGGGATATGATATTAAACGAATTATAATAGGTGATGGTATTATTACAATTGGCGGCAGGGCTTTCAACAG # Right flank : AAAAATTGGCGACTATGCTTTCTCAGGTTGTCGTAGTCTAAAGAATTTTACCTTTGGAAGTGGATTACAGAGTATCGGACAAGAAGCATTCTCTGATTGTATCAATATTGCACAGATCTCAAGTGAGGCAGTCGTACCACCAACCTGTGAATTAGATGTTTTTGCCAACATTGATAAATCTAAATGTAAACTTATTGTTCCTAAGAATAGTCTTGACGCATATAAACAAGCAGACCAATGGAAAGATTTCTTATTAATAGAGGGTAGCACTACTGGCATTACAAACACTTGTTTATAATAACTCAGAACTTGCTGATGTCTATACAATAGATGGAACAAAACGGCTAAGCAAAGCAAGCACTGACGAAATTAATGCTTTGCCTAAGGGTATGTATATTGTCAATGGTAAAAAGATAATCATTAAATAATGGACACAATGGTTTTCCTAAGCCACACCATATATTTTTATTTGTTGTATGTTCGTCTGACAAAGAAATAAG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGATCTCTAACTTCTGTAACCATTCCAAATAGTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 68997-74264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCS010000003.1 Prevotella jejuni strain SCHI0011.S.13 Contig_3_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 68997 47 100.0 30 ............................................... TCATTACCACGCTTGAAGTACTTATCAGTA 69074 47 100.0 30 ............................................... AAGGGACTTTTGCAAACAAGTTTAGGGACT 69151 47 100.0 30 ............................................... TTTTCTCTCTTGTTTCAAAATACTTTCATT 69228 47 100.0 30 ............................................... GATAGACGAGTACTCTACTGCTGCACTTAC 69305 47 100.0 29 ............................................... GAATAGCGAACAGCTGTCTGTTGATTCTA 69381 47 100.0 30 ............................................... TTAAAAGTTTAATTTACGCTGAGTTAATGT 69458 47 100.0 30 ............................................... CTGAATAACTTTCAGGCTTAATCACAGCAC 69535 47 100.0 30 ............................................... GTATCTACACCGTAGCCACGTCTGCCAGGT 69612 47 100.0 29 ............................................... AGAGTAAGTATCATCCAGCTTGATGTCAG 69688 47 100.0 30 ............................................... GAGCAGGGTCAGGAGTGGTCGCAGGCTCTA 69765 47 100.0 30 ............................................... GTCCCCTATACCCCTTGTTATGCTTCGCAA 69842 47 100.0 29 ............................................... AGTGAGTTGATTAGGGTGAGTTCGCTCCC 69918 47 100.0 30 ............................................... ACTGGCCAGATAGCAGAGCGTCCCAAGCAG 69995 47 100.0 30 ............................................... TGAATATGAACTAGAAGGTATTAAAGCACC 70072 47 100.0 30 ............................................... AAAATATTATTACTACCTTTGCAAAGTATA 70149 47 100.0 30 ............................................... ACGAATGCGCCGACGCCTCAATTCGGATAT 70226 47 100.0 29 ............................................... GGCTTTAACAAGCCTGTACCGATTGTATA 70302 47 100.0 30 ............................................... TTTAAGTAATTTAATCATACGTTGTTAAAA 70379 47 100.0 29 ............................................... CAGGCATTACACCGTTACGTACGAGTTGA 70455 47 100.0 30 ............................................... CATCCAATTTAATATCAGTAACGAATGACC 70532 47 100.0 30 ............................................... ATTGGCCAGAGATAAGAGCATCCCAAGCGG 70609 47 100.0 30 ............................................... TGCGGAGTTACTTCATTATTGATTCGATTA 70686 47 100.0 29 ............................................... AGACGAACAACGGTTACAAATGAAAGTGG 70762 47 100.0 30 ............................................... CAGGGGCAGGAGTGGTCGCAGCAGCATTCG 70839 47 100.0 30 ............................................... TCATGAAGTCATCTTGAGCAGGAGAAGTAA 70916 47 100.0 30 ............................................... TATTTCCAGCTGGTTTGTCGAAGTTGGCAG 70993 47 100.0 30 ............................................... ACCTCTTTCCAATTAAAGATGAGTGAAGGT 71070 47 100.0 30 ............................................... GCAGATGCATAAGGATTGCCATAAGGCGCA 71147 47 100.0 30 ............................................... TGAGTTTAATACATCATACACAACGCATGA 71224 47 100.0 29 ............................................... CGTTAACAAATATAAAAGTTAAAGATTTA 71300 47 100.0 30 ............................................... AGTAAGTTGATTAGGGTGGGTACGATCCGA 71377 47 100.0 29 ............................................... CATATAGAAGTCTGGCACGTTCATCACTC 71453 47 100.0 29 ............................................... ACTTAAATAACGGTGTGAGCCACCTTTAA 71529 47 100.0 29 ............................................... ATATTAAAGTTAATATATTTCTTCAGAAC 71605 47 100.0 30 ............................................... TCTCGACTATTATAGAGGTGTTCATGAGGC 71682 47 100.0 30 ............................................... CTATTATCACTCATGTCGATTTCTTTTCGT 71759 47 100.0 30 ............................................... CTGTGCGTACCTCTGCACAGGCGGATGCTA 71836 47 100.0 29 ............................................... GTCTTCATTTGACAACCAGGCAGACAAAT 71912 47 100.0 30 ............................................... ATTGATAAATAGTTATCATGTTCGTTAAGC 71989 47 100.0 30 ............................................... GTAGATTTCCATTGCCCACTGCAATTGCTC 72066 47 100.0 30 ............................................... GCTTGAAACTCTTTCTTGGGGTGACGTGTC 72143 47 100.0 30 ............................................... TCTTAATATTCTTAGCTTCAAGTATTGAAG 72220 47 100.0 30 ............................................... CAGTACGACCATCAAAAGCAGGAATAGTCT 72297 47 100.0 30 ............................................... AGATATAAGCAAGAGTATAACTATCATCGA 72374 47 100.0 30 ............................................... AAAAGACCTTTAAGAAGACTTGAGACGATA 72451 47 100.0 29 ............................................... TAGTCGAAGCAGCATTAGAGGAAGCGCTT 72527 47 100.0 30 ............................................... TAATCTTGCTCATACAGGCCATTCACAAGT 72604 47 100.0 30 ............................................... TAATTTGAATTTTTTCAATTTTCTTTTTGG 72681 47 100.0 29 ............................................... TAATATTATATATATAAAAGAAAAAAATA 72757 47 100.0 30 ............................................... ACGTACGGCATCCTTCCAATCTCCATTTCC 72834 47 100.0 30 ............................................... GAGTAACGCACAGAGGCGTATCCTTTATTT 72911 47 100.0 30 ............................................... TCACAGCACCAACAAGAAGACCAGAATTCA 72988 47 100.0 30 ............................................... GTATCACCACCGTATCCACGGCGAGCAGGG 73065 47 100.0 30 ............................................... ATGACTTTAATGTTTTAATTAATTATGCCA 73142 47 100.0 31 ............................................... CGTCCCCTATACCCCTTGTTATGCTTCGCAA 73220 47 100.0 29 ............................................... TACAGTCAGAGAGAGAACGAGAGTAAGGC 73296 47 100.0 30 ............................................... ACTTTTATTTTTTAATTAATACCTGAGCTA 73373 47 100.0 30 ............................................... CCATACCCATTAAACTAATACCTGCCGCCT 73450 47 97.9 30 A.............................................. TGTCGGTAAGATTAATATACGCATCATCGT 73527 47 100.0 30 ............................................... ACCAATCAGCAACAATATCAGATGTTCGGT 73604 47 100.0 30 ............................................... GTGAGTAGCTTTCAGGCTTAATAACAGCAC 73681 47 100.0 30 ............................................... TCGTATTGGTGTTAATGGCACTCAGATGTA 73758 47 100.0 30 ............................................... GGATAAAAGATGTCACTTCACCATCTAAGC 73835 47 100.0 29 ............................................... CAATTTTGTGGTATAAGTACAGCATACTG 73911 47 100.0 30 ............................................... CGTCATAAGCGACATAACGGTTTACTTGTT 73988 47 100.0 30 ............................................... TCTTTCCAAGAGGATACAGCATTAGAGGTA 74065 47 100.0 29 ............................................... ATTAAAGATGAGAGATACAGCTTCCCGGC 74141 47 100.0 30 ............................................... GTACCATTGAGAGGAGAGCGAGAATTATCG 74218 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 69 47 100.0 30 GTTGTGATTTGCTTGAAAAGTCTTACCTTTGTGGTATCAATAACAAC # Left flank : TTATGAACTTGCTTTTATCCTATCAATGAATTCTCTCTTATTTTGTGATGATCTTGCTTGTATCCTTTTGTGAACATGCTTTTAGTTTATTATGAATTTTCTTTTATCCTATAATGAACATGCCTTTATCCTATAATGAACATGCTTTTATCCTATAATGAACATGCCTTTAGTTTATTATGAACTTGCTTTTATCCTATAATGAACATGCCTTTAGTTTATTATGAATTTGTTTTTATCCTATAATGAGCTCGTTTTCTCACTCAGAATGTAACCCACTAAAACCCTTGTCCCTTTGTCTTTAGAACTTCGTTAACAGTAGTCTTCCACTCCTCATTTTGAAATCGTCGGCAAAGATATATAATTCCCCGTAAACGGCAAAGAATATCCCTTGTAATTATTACAAAAATCCTTGCAAATAGTCTTTTTCATCTAAAAATACCATCTTTGTGGTATTAATAGCAATCCCCATTGTGACGAGAAAGTATAATAAATGATAA # Right flank : CTGATATGTGGTAAAGCATTGTGTGTTAGCGACATATAAAGTTGTTGTAAAAATAAATTTTGATCCACAACTCAAAATCCCATTCCTTTTGAATGGGATTTTTTGTATTGTATATTGATTAAAGCGACTGTATTGTAATATATTGCTGTCCGATAAAACCACTATATGCTGCAATATTCTCTCCCAACCCTGCTGAAATACTCATGATTAGTTCTAATTTCAAATACCACCACCCCTAGACCAATGACAGCTCTTCTGGCGGGGCTTTTACCTGGGTAATCAATCTTTCCCAATCTCTATGTTGCTGCTCAAAGAAACTTTGTATTGATACATAACTCATAAGTAGAATTCTTATCATTGTAGCCAAGCCTGAGAAGCTCCAGGGTCTCTTTATTTTATTCTTCACAAGTGTTATAAACAGATTGGCTATAAGTGTAATCCATATTTGTATTTTTATAGCATTCGCCCTCTCTCCATAGAAGTATCTTAGAGGAAAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAAGTCTTACCTTTGTGGTATCAATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //