Array 1 2291927-2290505 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CM001848.2 Lacticaseibacillus paracasei strain LcY chromosome, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2291926	    36	 100.0	    30	....................................	TGTTTTCTCCAGAACAACAGCTTAGACGGC	
   2291860	    36	 100.0	    30	....................................	TGACATTGTGGGTATGCAACAAATCACCCC	
   2291794	    36	 100.0	    30	....................................	GAAACTTGACAAAAACAATCTTATCTACTG	
   2291728	    36	 100.0	    30	....................................	GAATATCATAATGCGGACGACCCATTACCA	
   2291662	    36	 100.0	    30	....................................	AAAAGCCGGTGCAATATGCACCGGCTCACT	
   2291596	    36	 100.0	    30	....................................	GCACTGATGAAACCGCACAACAGTTGACCG	
   2291530	    36	 100.0	    30	....................................	GATCGCGGCACGATTGTAAACGAAGAAACC	
   2291464	    36	 100.0	    30	....................................	CCAAATTGGTTAGCACCGCTTAAAGACGAA	
   2291398	    36	 100.0	    30	....................................	TATCAGAGGCTTATCCATTAAACAACTGGC	
   2291332	    36	 100.0	    30	....................................	AAACTGCCTTCCGTTGCGATCAACTCGCGC	
   2291266	    36	 100.0	    30	....................................	AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG	
   2291200	    36	 100.0	    30	....................................	TCGTAGCGGCTAACACGCTTATGGCTGACA	
   2291134	    36	 100.0	    30	....................................	AAAATATTTCTAGAATTAGCAACTTTATGG	
   2291068	    36	 100.0	    30	....................................	GATCGTTGAAGAAAGGCTGATCAATATGTT	
   2291002	    36	 100.0	    30	....................................	CGCAAAAAATGTTTTGACAAGAACACATCG	
   2290936	    36	 100.0	    30	....................................	GGCCAATATCATCAGTCGGGAGATTGTCGC	
   2290870	    36	 100.0	    30	....................................	ACTCGTCAATATCCTTCTGCATGATCAAGT	
   2290804	    36	 100.0	    30	....................................	GCAATCGCGATACTTTCACCGATTGCAACA	
   2290738	    36	 100.0	    30	....................................	AACAAAATAATAGGAGGTTTTTACCATGGA	
   2290672	    36	 100.0	    30	....................................	ATGACTTTAACAATCAAATCCCAAGTTGTT	
   2290606	    36	 100.0	    30	....................................	TATTATCCTAACACATCCATCGAGAAGTTA	
   2290540	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        22	    36	 100.0	    30	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG
# Right flank :  TGAATATTCTAATGTTGTTGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATCAATTGCGATTAATAACTTATTTGAACCCTGGAAAGCATTAAGTCAGGCGGCCATTTGGCTCGTAAGTGTTGCAATTTCAACTTGTAAGGGGGTCTGGTAGCCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAAGCATGCACATATTCAAAAAGGACGGCAGCGGCAGTTTCATAATCTTCAAAGACCGGCACTGGATAAACACATTCCTTTTTGAGGGAAGCGTGAAAGGATTCCATTGGCGCATTATCATACGGACAACCCTTACGGCTGTATGAGTGGCGGATATGTAGTTCAGTTAAACGTTGATTGTAATCATCGCTGGTATACTGTGATCCTAAATCCGTATGGATAATCAGGTCCCCAGTAATGGTTCGATTTTTAACCGCGCTTTCAAGGGC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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