Array 1 11892-10815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000523.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 11891 37 100.0 45 ..................................... TTCCTGTAACACTACCCTTCTCGGCAATCCAGGATGTGCTTCGGG 11809 37 100.0 45 ..................................... CCTCCCATTAGGAAGTGTATAATCATCAGTGCCCAGAGGGGGCAC 11727 37 100.0 40 ..................................... TTACGTTTAGGTTTGGAGACATGGGTATTATAAGGCAATT 11650 37 100.0 44 ..................................... TTGCGAACCATCAAAGGGGGAACGGTGACCCCAATGACCATCGT 11569 37 100.0 45 ..................................... CGGGCAAGGGGCAGGGTGGCACTTCTTCCTTGAGGATCTTCTCGG 11487 37 100.0 46 ..................................... TTGCCATAGACTACTATGTCGTAGTCTATGTGTTTCTTCCCCCATT 11404 37 100.0 43 ..................................... ATTCCAACGTTTAGAGCGAGGAACAAGGCATGAAATCTACATT 11324 37 100.0 39 ..................................... CAAATTTAGGGTCATTAAGTAACACTCCGACAAAAGGCG 11248 37 100.0 40 ..................................... TATTCCCCCGCCCACCACCTCTCTAACCAGCCCCTGTCTG 11171 37 100.0 44 ..................................... AAGTTTAGAATCATGAGTAGCCATAGGGGGCACTCGACTCCCAG 11090 37 100.0 39 ..................................... TTAACCGTTCCACAACTTATTGCGATTTTTTATGATGAG 11014 37 100.0 44 ..................................... AATCCGGTGAGCATCATATCTTCGTAGATATGCTCCCATGCTCT 10933 37 100.0 45 ..................................... ACTTTTAGACGGAAGTTTTCCTCCTCGTCCGTCTGGAACTGGACG 10851 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 14 37 100.0 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCGACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCGGTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCTTTGGGGGTAATAGTTTCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : CGTTTCCGCTATTTTTGAGCCAACCAGACCATTGAGCCAACCGGACGATCGCATTTCCCAGACGAGGAAAGCGAAACTGCAGAAATTAGTTAATTTGGAGAGCGATCGCCAGGTATAATTTTCTGTGAGGGAATTAACTCAATCCATGGCACCAAGTTCATTGACACCAGAAACACACCTACCAACTTTCCCCGTTTTGGGATTACCAGTACATCTGGCTGATAATTATAGCCAGTGGCTGTCATCGCGGCTGAGTCAGGGTTTGGGAACTAATGTCATCACCCTCAATGCTGAAATGGCGATCGCCGCCGAATCTAATCAACCCCTAGCCGAATTAATCCGAAACGCCGACCTAGTAATTCCTGACGGTGCGGGGGTCGTGCTTTATTTAAAATTCAAAGGACACCCTATCCAGCGTTGTCCGGGAATTGAATTAGCCGAAACCCTCCTCCATGAGTTTAACCAGCTAATACCCTCTGGATTGGTGTTTTTTTATGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 395-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000513.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 394 37 100.0 46 ..................................... AGAGGGCGTATATTGATAGCCCTCGCCGCCCAGTCGAACCCGGTAG 311 37 100.0 42 ..................................... GTCTTCGGAGTTCAGGGGTTTGACCCCCTCATCCTCATCCTC 232 37 100.0 41 ..................................... ATTGGGGCTCCGCTCCCCAGTCGTAGATGTCTTCTAAAATT 154 37 100.0 41 ..................................... TATTAACAGGGGATGGTTACCCAGTTTGGGAGCGACCCAAT 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 5 37 100.0 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTAAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCCACCAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCCTACGAACCACCAGACTTTCTCATTTTGTAAGGGTTGCGATCGTCTCATTTTTCATCACTTTGGGGCTGAAATGCCTTTGAGCCAATGATTTTCAGCAATGTAAAGTTATATTGCATTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAGGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : CCGAAGGTCTTGCCGGAGATCTGCCCACTTGTCCCGACGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 7406-11128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000512.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 7406 37 100.0 40 ..................................... AGAGATTTTGGCGCTCATCATCGAACGATGATGAAAACAA C [7423] 7484 37 100.0 35 ..................................... GAGTTTTAGTTAGTCAGTTTTTTTAACTAACAAGA C [7501] 7557 37 100.0 42 ..................................... CACGACACGCATAATGAGGTTTTCGATGAACTCCCCATCTAT C [7574] 7637 37 100.0 42 ..................................... TCTCGCCATTTGGCATGAAGGGCAGAGGATCCATCAAACAGG C [7654] 7717 37 100.0 44 ..................................... CCAAAGAAGCTGCCCCAAAGGGGAACTTTGAGACCCAGAGGAAT C [7734] 7799 37 100.0 43 ..................................... TGGGAAGTTGCTTCCTGGGAAGTTGCTTCCTGGGAAGTTGCTT C [7816] 7880 37 100.0 41 ..................................... CCTCTTTAGTTTAAGGATTTAGTGTTTGAACCGCTTCAGAA C [7897] 7959 37 100.0 40 ..................................... ATACCTCCAGGGACTTATGCCCTTTTTGCCATCAAAGATG C [7976] 8037 37 100.0 43 ..................................... TAACCAATTGAGCCTTTTTGGCTCATCAGGAGCATCTTTGAGT C [8054] 8118 37 100.0 41 ..................................... ATACCCCAGCCTCCCTCGGACTCCTTCCCTCCGGTCCCTTT C [8135] 8197 37 100.0 39 ..................................... TCCTTAGTCATTTCCTTCGCCAGCCAAGCCTGGCTAATA C [8214] 8274 37 100.0 38 ..................................... TTTCCCCCGGCTCTCTCGGAGCCATCCGATTGCTCGGA C [8291] 8350 37 100.0 43 ..................................... TTCCTTCTGAGCGGCAATAATCTTGGTAGACTCCAACATGAAG C [8367] 8431 37 100.0 41 ..................................... TTTTTATTTGCCACCATAATTGGGTGGAAGTTTTTTTCCAC C [8448] 8510 37 100.0 42 ..................................... ACTCCGGAGAGGACTGCTCCTCTCACGGATTCTTGTGTGTGA C [8527] 8590 37 100.0 43 ..................................... CACTAACCTTTCCATTGTGGAGAATCCCTGCCCCGAGTGCGGC C [8607] 8671 37 100.0 46 ..................................... CCTCGTATACGATCCAAATGACGATCAGGATGGTCATGTTCCAGAC C [8688] 8755 37 100.0 39 ..................................... CTAATCGGAATAGTTTTAACTGCTGGTATTATGGTGATG C [8772] 8832 37 100.0 40 ..................................... TTGAACTTCAACTTCTTGAACTTGTTTAAAATTAATCATT C [8849] 8910 37 100.0 45 ..................................... GGTTATAATGACCTTTGTGCGGCTTCCCCGCACCTCAGTCCCATA C [8927] 8993 37 100.0 44 ..................................... AAAACCTGAGTCTGTTTGTAAAGAAAATTGAGAAAAGAAATCTT C [9010] 9075 37 100.0 42 ..................................... TCGGAGGAAAAACATATAGCCGATCGCAGCCTCTTGTCTGAA C [9092] 9155 37 100.0 39 ..................................... GCCCAACTAGGAACTTTTTGTTGTGCTAACAGTGATTTG C [9172] 9232 37 100.0 46 ..................................... AGCCATAGTTGACCTGCGTGTTAGTGTTAAGTTGACTCAAACCTTG C [9249] 9316 37 100.0 46 ..................................... TTTGCTGATAAGACCATAATGTCTCCTAAACTGTTCTGAAATTGCA C [9333] 9400 37 100.0 46 ..................................... TTGCTATAAGTGTTAAAGTTGTCACTACCCCCGCTATCAGCGGGGG C [9417] 9484 37 100.0 38 ..................................... ACCCGGTCCATCCCTTCGGAGGACTCCAGGTACATCCC C [9501] 9560 37 100.0 46 ..................................... GTTAAGGTGCAGAGCCACGCACCCGACCGTGTTCAAGTCTTGCGAC C [9577] 9644 37 100.0 42 ..................................... AACCTAAAGAACACACCAAAACGTCCCAATCAGAAAAATATT 9723 37 100.0 45 ..................................... CATGAGCAATGCCGAATGCCCGGGCGCAACTTGGTCAGTTATAAC 9805 37 97.3 46 .................A................... TAGCTTCCGCCCTTTGGCGGCGGATAGAATGCGATCCGCTTTCGCG 9888 37 100.0 44 ..................................... CTTACTTAAAAGGTAAGTAGTCAAGGGTTTTAATGTAAAAAACG 9969 37 100.0 41 ..................................... AACTTTTTGTTCATAGGTCGTTTTAAAACTTTTCGCTCCAA 10047 37 100.0 41 ..................................... TCACCTAGCAAGTTTCTTAAGTTCAGCATTCTTTTTTTTAC 10125 37 100.0 37 ..................................... TTTTGATAACTTAATACCAGGCGAGGTGGGTTTTAAT 10199 37 100.0 41 ..................................... TCTGAAAAATTCCTTGCTCCAGAAATAGCTTTTAAGATTAA 10277 37 100.0 44 ..................................... GCTCTACAGGAGAAACCAGCCATACTGTAATAGCAATACTCATG 10358 37 100.0 42 ..................................... ATTATTTCCTGGCTCGCAACAAGCCAGTCCCCATCTCTCCCC 10437 37 100.0 42 ..................................... CCGAACAAGAGTAACCGTTCGGGAACCTTCATAATACATCCT 10516 37 100.0 53 ..................................... TTCTCCGCCTTGTAGGCTTCGATCTGGGAGACTAAATCCCAGTCTTCACACTC 10606 37 100.0 50 ..................................... AGAAGAATGGGGAAAATACCCCCTAATGGAAATGATAAACGCTCTTCGAG 10693 37 100.0 44 ..................................... CTTAAAGAATCCCATCGCGAACGCTGGTTTTCCCACCATATGTG 10774 37 100.0 43 ..................................... CGGGCTAAATTTTCTAGCCAAGAAATTAACCTTTTCTCGCTCG 10854 37 100.0 42 ..................................... CTAAGTTTATAGGCAACCTCCCCTATGTAATTAGAGGGTTTT 10933 37 100.0 43 ..................................... GACCAGAGAGTGGCGTTTGCTTTGACTTCGTAATATTTACAGC 11013 37 94.6 42 ....................G.........G...... CGACTAATAGCCCCGACATTAGTGATGAATGACTGCAGCCGT 11092 37 86.5 0 ..G.........A........A.G......G...... | ========== ====== ====== ====== ===================================== ===================================================== ================== 47 37 99.5 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : AGGTGATTAATCCACCATTGTACAGGTGCATTGGATTCAGTTAAACGCGCTACGGACAATCGGGATATTTAATTACCCCTCCGACTTGACTCTGGCTGCTACGGTTTTGCTTAATTGTCGCCTCGCCCCTGTCCCCCGGATATGGTTGGCGAGGTGATTCTCATAATTATTTCCGTTTTTTGGGGCGATCGTGCCTACTTAATCGATGGATTCGTTGCAGGGTAATGGTTTCGGCTTGTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGACTTCTAATCCTGCCCTAGTTAAAGCAAACTTTAGCCACGCGAAGAAAAGTTTTTGTTTCGGGGGGTTGACAGTCTGGCACTATGGCTGATAATATAAATCCAGCGAAAACAAACGAATTTGCTCCCCGAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGCACCTTGAAAACCGCATACCGTAAGGTTTCCAAAGGTATAGG # Right flank : CGCCGGGTGGTGTGTGGATGTTGTGAGGGTTGAGGTCGTGTCATGGCGGGGTAATTTCGCAGTTGGGGAGGGGGGAAAAAGACCAGTCTGGGGGATAAAACTTGTTGGGGGTGTAGAAGGGTTAGGGTTGGGTTGAGGCGTGCAAAATCCGATTAATAATGCCACTGGTAGAAGTAGGCATTTCCACGGCAATGAGGACGATTTTACCGTTATAGGCTTGAACCGTGGGGGCCTCCGGTAGGGTGTCAATGGTGTAATCACCACCCTTAACATATATATCAGGTTGTAGCTGTTCAATAATCGCCGTAGCAGTGCTTTCTGGAAAAATGACCACTGCATCTACGGGTTTTAACTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCGGCCGAGTGGGGTTTAATCAGGCGAACAGAGCGATCGCTATTGAGACCCACTACCAGCGCGCGCCCCAAACTTTTGGCTTGGGTCAGGTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 1525-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000264.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 1524 37 100.0 43 ..................................... TCCACCTTCCCAAAGAGGGTATCTACGTTAAACACCTCCTCGG 1444 37 100.0 46 ..................................... TTGATGCTCCCAAAACTCCAAAAAGTATGCCCAATAAGGCTATCAG 1361 37 100.0 41 ..................................... TTCCTCAGGGCTGAATTTAAATACCCAGCGGGTTTTGAACT 1283 37 100.0 51 ..................................... TCGCTCGCTCTTGCGAGCTATAGTTCTAGCTACCTCTTGCCAGCAAGAGGT 1195 37 100.0 40 ..................................... TATTGATTCTAATTGCTTTTTATAATATTCTTTTGTATAT 1118 37 100.0 42 ..................................... TTTCAGACCGTTTTTCATCGTACAGCGTTACGTCCTTTCTTC 1039 37 100.0 43 ..................................... TGAATTTTTTAATTCAATATTAAACTGGTTCGATTCCAGTATA 959 37 100.0 41 ..................................... TTGATGGTATTCCCCGATGGGCCGAGTAATCTAACCAAGGG 881 37 100.0 35 ..................................... GTAGGAATACTCGCCCGCTAGCCACCGCTCGAGCC 809 37 100.0 44 ..................................... TTCCTCCGGTTTTGGAGGTCGAAGGTGCTGGGACCTCGACCTTC 728 37 100.0 45 ..................................... TTCTATTAATATTATTCTCATTTGTTATTTCCTTTTTTCTTCTGT 646 37 100.0 41 ..................................... ACTCCCTCTTGCTGGGAAGCAACTCGCTTGTTGAACAGGTT 568 37 100.0 40 ..................................... TGCAACGTTACGACAACAACGGTCTGGAGTTGGTCATCGA 491 37 100.0 46 ..................................... CTGTTACGATCGCAGCGCCGATTACGGCAGCGATCACTGCTGTTAA 408 37 100.0 46 ..................................... TCTCGCGGATATATGATCCGAACTTATCAGCAAGAAGAGATTCTTG 325 37 100.0 48 ..................................... TGGGTATTATAAGGCAATTCGACATAGAAGGAGCCCCCTTCTTCAATT 240 37 100.0 43 ..................................... GGAGCCCTCTTCCGAGTAATTGTTAAACCCCCATTGGTCCCGA 160 37 100.0 42 ..................................... CTCGACAGTGGCTTCTTCCTGCAGCCACTTGCCGTACTGCTT 81 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 19 37 100.0 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CGGG # Right flank : CGCTGTACACATCCCAGTTCTGCCGTATGTTGAGATGCAACACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 43-795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000254.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 43 37 100.0 42 ..................................... CCAAACTGTGCATCGATAAGATGCCAGTGACCAACTCCCCCC 122 37 100.0 39 ..................................... TATAAGTATAACATTAATATTTGTTCTTTTTAAAGAATT 198 37 100.0 43 ..................................... ATGAGGCGCCACGCGATGGCACACGTCTGTAGCGAGGTTTGAA 278 37 100.0 49 ..................................... CAAAATTGTTCAACAGGGATAGCCTCTTGGGGCGATGCCCTGCGTCCAA 364 37 100.0 51 ..................................... CGTCTCTCGCTCGTCATAAACCCCAGTTACTAGGAAGAATTTATCTTCCTC 452 37 100.0 44 ..................................... ATGCTGGTATAGCACCGGCAGGTCATGTTCGTATGCCAACCTTG 533 37 100.0 39 ..................................... GCTGTCGATGTACAGACTATTTTCTGTGAATAACCGAGG 609 37 100.0 46 ..................................... AAGCAAGTTGTTCGTAATAGCATACCGCTTTTCGGCTCCTGTCCAG 692 37 100.0 30 ..................................... TAAGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [759] 759 37 91.9 0 .........G...........AC.............. | ========== ====== ====== ====== ===================================== =================================================== ================== 10 37 99.2 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : AGAGGTGGTTGGCGATCACATTAGAATCCTTCCGGAAATCGAG # Right flank : CCGGCGATAAAACCGAGTGGTCAAAAAAAAAAGCGCCAATGGTGAAGTCTTGTTAATCAAAGTGTGGGGGGGGTTGGGAAACCGTGTGAGGAGAAGATATTTCCCATCAATTAACCTTCCACTTCCTGATTAGTTGGTTGGGGGGAATTTCCTAACCTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAACCAAAATGCTGAATTTCCAGAAAGTTAGCATAAGCAGGCGCCGGTTTATAAATCCTAAAACTCTTCATAATTCCCAGCGTCGCCGCGCTTTCCAGGGGACCCACAAAACTACTATCGCGGTCTAAAAAATAAGGCTGTTTTACCCAATGTTCCATCTGGTTATTATTCAGGAAATAACAGCCAGCGTGGGGGTTTAAGCTGCGATTAAATTGAATGGGTTGTTCCATCACTTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCGGTTACATGGGGTAATAAATCCCCATCCACATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23223-22316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000021.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 23222 35 100.0 35 ................................... GATCAATTGATGTAGGATCCTGATCGGAGTTAACC 23152 35 100.0 35 ................................... TTGGAGGTAACGGCCCAGGCTCAGGGTCTGGCCTT 23082 35 100.0 39 ................................... GACAACTAACAACATTAGATTCCATGCTATATGGTTCAA 23008 35 100.0 37 ................................... AAGAAGGTCCCAACAGATGTGTGGGATTACCATTTTG 22936 35 100.0 34 ................................... AGAAGAGGTATTTGGTTGGCATCCAAGCGAAGCT 22867 35 94.3 33 .................................TG CTTTTCTTCTATTATCCCCTGGTTGAGGATAAG 22799 35 100.0 36 ................................... TTTTTACATTCTTGTGTGTTACCCAATTGTTCCAGT 22728 35 100.0 37 ................................... AGACCTTGGTGTGCCAGCGCCAGGTGTGCCATGTCCA 22656 35 100.0 38 ................................... AGTTTGGACGGTACTGGTACTATATAGACCTCTAACGG 22583 35 100.0 35 ................................... GTTTCCGATTCTTGCCGGCAGATGTCCTCAACCCC 22513 35 100.0 47 ................................... GAGTTTGGACGGTACTATATAGACCTCTAACGGAAGCAGAGTTCCGT 22431 35 100.0 46 ................................... TTAAATTAGCTGCCCCCCTAGCCCCCCAACTTTGGGGAGAAATATA 22350 35 85.7 0 T...C................C...C.......C. | ========== ====== ====== ====== =================================== =============================================== ================== 13 35 98.5 38 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : GAGGAGTTTCGCGCCCCGGTGGTGGATTCGCTCGTTATCTATCTGGTAAATTCGGGAATTTTTACCCCGGAAGATTTTACCCCAAGTGACGAACGAGGTGGGGTTTATCTTTATTCCGATGCTCTCAAAAAATATCTGAAGCATTGGCAGGATAAGCTTTCCTTGAAAACGACTCATCCTCATACGGGTTACAAGGTTAGCTACTATCGGTGTTTGGAGTTGCAGGTTTGGGAGTATATTTCTTGCTTGATAGGAGAGCGGGAAGTTTATCGGCCTATGAAACTGGAAAAGTGGTAAACTAGAGTTTCCGGAGGGGTTCGACAACTGCTCAAACCTGCATTGTTTCGTTAACCCCCCCCGGAAAGCCTTCTCTCTCTGAGTTTGAGGGATTCTGGAGAGTATTTTATTGCAAATATGTCTCAATTATTTTGGTGCTTGCTTGACCCCCCCGGAAATGGAATGTTACACTCCAGTAATAGCAAGGGTTTCAACTCGGCACT # Right flank : CCCACCAACCTCCCCCTAAAAGGATGAGGCCTAATTTTTTTGCTGATTTGAAAATTCAACCTATAGAGCAAATAACTAAAAAAAATACCCCCCAAGTAGAGGGTATATTATTAAAATAAATTCAGTTTCTTTCCATACTTGATACCGGCTTAGAAGTCAAAGTGCTGCTATTTTAAAATGGGTTGTAAACCACTTAATATTCAGCTTGAGGAACCAGCTTTTGTAAAAAGTCATGTTTTTCAATTTGAGCTTTTACCGATTGAAAAGTTAATAATGTTCTTCCTTTCTCGCCTTTTTATGACTAACAATATAGACTCCCCAGGGCAGACGAACTCCTGTTAGAGTCGTGAACTTGAACTGAGCGTGTTCCGGGTTAGCAATATCCAAATCTGCCCAACTCAAATTGGTATTTTGTAAGTTCGTCTGTGCTAAATTTGTACCACTGAGATTCGCCCAACTCAAATCCGCATCCCTGAGATTAGCATAACTTAAATTCGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 28181-27848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFN01000021.1 Limnospira indica PCC 8005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 28180 35 100.0 34 ................................... TTTTTAGGATGCACTCGATGGCACAGCAGAGGCA 28111 35 100.0 41 ................................... TAGTTTTTTCCTTCCTCCCTCTTATCGCGCCTCCCATCACC 28035 35 97.1 34 ............C...................... AGTAGAGTCCCATCTAACATAGTAAAGGGGCGAT 27966 35 97.1 49 ............C...................... ATTAACCTTCTGCCGTCTCCTGGTTGGGGGTAATTTGGGGGGTTACTTT 27882 35 91.4 0 .....................C...C.......C. | ========== ====== ====== ====== =================================== ================================================= ================== 5 35 97.1 40 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : TTTCTTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATGTGCGCTCAGAAGATTTAAAAAATCCCAAGAATCAGAAGATTAAAAATACGGTTCGTGTTTCCTGTTTACCCACAGAGATTATAGCACAAATGAGTCAAATTTATTGCTGTTTCGTTGAGTTGGTTTCACTTTCTGGCTTTCCAAATGTACAAGATTATCTAGAGGTGAATCAGAAAACGCGCGATCCGATTGAACCCTATTATCTTTACTCGGAAATTAAGGAATGGGTTGGGCAAATTTTGGATCACGATCAATAATCTTGTGGGGGTTGAAGAATCGCTGAAACCCTGATTCTTTCGTTGACCCCCCCGGAAAGCTTTCTCTGTCGGAGTTTGAGCGATTATTTATACCCTATTATTGCAAATATGTCTCAATAATTTGGGTGCTTGCTTGACCCCCACAAATTTGAGTGCTAGAGTACAGTCAGGGCAAGGGTTTCAACTCGACACT # Right flank : CCCACCAACCTCCCCCTAAAAGGAGGAAGCCTAATTTTTTTGCTAATTTGAAAGTTCAACCTATAGAGCAAATAACTTTAAAAAAATACCCCCAAATTTGAGGGTATATTGTTAGAACTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTGGTAAACCACTTGATATTCAGCTTGAGGAACAAGCTTTTGTAAAATGCGCTGATGATTAACTGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTCTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCCAAGAATTTGCACAAAACAGGGCAGGCTACCCTTGACAAAGTTAACTGTTTGTGCAGTTGAACCGCTCCTTGAATTCGGTCGGTAGCTCGTCCC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //