Array 1 150066-150292 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAU01000038.1 Clostridium tetani strain 63.05 contig_0040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 150066 30 100.0 35 .............................. TACATACGGCTGGTAACCCACTGGCATTTAATAAA 150131 30 100.0 36 .............................. TAGTTAGTCCAAATAACTTCTACTCTTTCCTTTCCC 150197 30 100.0 36 .............................. GGTCTTTGTATTCCTATAACTTGAATTATTCCTGCT 150263 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTAAGCTTTAACATGGGTTAAATAGAAGC # Left flank : TAGCAAATATCAGCTTGTACAAGGCTACCTTGTTATATTTATTTTATAGTTAAATCCCCTTATAATAAATTTACTTTCTGCAATAGAATAAAAGAGCCAGGACTAGTTCTTAAAAGAATTTGCCCTGGTGGCTACTTATTTTTATAATTTACTATTGTTACACTAGCTTATATCCATACTCATAATGGACTTCCCAAAATAAAGAATATATACTTGTCCAATACTTCTACTTTAATTAAATATATAATATTTTCATTTGTATTATTATCCTTATATCTATACATAAAATAATAGTATATACATAAAATATAAAAACAGGTTGACTTCCCAACCTAAGATTGAGAAGTAAGATATGAAACCTATTGATTTTCAATAGGTTAAGCATCCTAAACTCTCAATAAGCCCACCAATCATAAACGGCTGGTAACATTCTATAGGTTTGCTTGATATAGCGGGGTTTATAGATATTTGACCTAATTGAGAATGCCTATTTTACAGTG # Right flank : CCATAGGTTCCTTAAAATATAATCTTTTGCAAAGTGGTGTTGTATAATGAATAAATGTATTAAAGTAGAATTAAAATCTTGTCTTGAAAAAAATTTGTCCAATAAACAATCACAAAAATTTTTAAAAGACATTCAATATCTATCATGGAAAGGTTGTAATAGAGCTATAACTTATTTATATAATCATGATATGAAAAACTCAGAATTAAAATACAAAAATCTACCCAAAATTGATCCTAATAAAGAGTATGGTAAATCACTTGGTTCTTGGATAGAGGATAAATTAAAAGAAATTATGGTAGGTTGTTTAACTACTAATGTTGCACAAACAAGAGCATTTGTAATGAATAGATATAAGCAGGATAAAAAACAAGGATTACTTAAAGGAAATGTAAGTTTATCAAACTTTAAAAGAAATATGCCAATAATTATACATAATAAAGCATATAAAATAATAAAAGATGATAAGGGTTATATAGCTGAAATAGGTTTATTTAATT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCTTTAACATGGGTTAAATAGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6368-6215 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAU01000050.1 Clostridium tetani strain 63.05 contig_0052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 6367 23 95.7 41 ......A................ TTAAATGAGTGGACATCTGGGGAAGCAGAACTTAACGTAAG 6303 23 100.0 43 ....................... TTAAATGTAGATTTGTTGTACATATATTTAAGTTTAAAATCCA 6237 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 98.6 42 TTGAACCTTAACATAGGATGTAT # Left flank : GACTTGTAACTGTTATGGTTAGAGGAGATGTTGGAGCTGTTAAGGCTGCTACAGATGCTGGAGCTGCTGCTGCACAACGTGTTGGAGAATTAGTGTCAGTTCATGTTATACCACGTCCACATTCTGAAGTTGAAGTAATTCTTCCATCAGCTAAAGAAACTGCAAAATAATATTTTAATTAAAGCGTAAAGCAAAAAAACGTCGCTAAAATTTTTTAGCGGCGTTTTTATTTTTGAAAATATAATCGTCAATGAAATAAATATTTAAAAATGTACAGATCCTTTTAAATTATATAGAATTATTGATATAATTAACATATGAATTTTACCAACCGAAAAGAATTTTAAAATTTAGCTTAATCGTTGATATATAAGAGTTTAAGGTAGGTTTTTATATAATTTATAAAATTTTAAAATCACCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : GCCCCAATTTTTTCTAAATATCTTATTCTATTAGCGTCTTACCACCGTGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTATAATGTAAATAATATTACTAAGTATAGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGCAATATTAATAATTTTATCCATTATAATTGCTATATCACCAAAGCTTGGGTTCATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAATCACAGGAATTGGAGGAGTTTTTTCTGAGTTTGGAGAAAAAGATAATAAGTGGA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAGGATGTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 29113-28563 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAU01000050.1 Clostridium tetani strain 63.05 contig_0052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 29112 30 100.0 35 .............................. TATACACTTTTTTGTGCTATTAACCATCTTAATTT 29047 30 100.0 35 .............................. TAAAATCACCTCTCTTCCAATTCCTCTATCCTACT 28982 30 100.0 34 .............................. GCTATAAGCTTACTTAATTCCTTATTCATTTCAG 28918 30 100.0 35 .............................. CATTATTATGTAGAAGTGTTCCAATATAGAGGTAG 28853 30 100.0 36 .............................. TCCTGTTTTTGCTTTACAATTGCATTAACTTTATCT 28787 30 100.0 34 .............................. TCGTTTTTATTGCCTATTTTTATAAATTTATGGT 28723 30 100.0 35 .............................. ATCTAAAGGAACATTTAAATTTTTAACAGTTCCCC 28658 30 100.0 36 .............................. TTTTCCATACTTTTTTGGTTACTTTTTTTATAACCT 28592 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAGTTCAGAGGAAACAGTAATTAATGGTGAGAAAGTATATGTAGATGGTGATAATATTTTTAAATTACCAATTAGTGAAGAGGATTTTTGTAAATCTCTATACTTTAATAGTATAGTAGTAAGAATAGACGAAGATATGGAGATAATGGATTCAAGAATAATGATAGAAGCTTTTATAGATACAAATCCAGATTATTTTGCAGGTCATTCAATGGAAGTTACAATAACAGATAATTATAAAATATCAGTTGATGGATTGGCGGGTTAATATATAATATGTTATGTGTATGGGATATAAATATATTAAATTAAAAATTATAAACTTTCCCAGGTGATTTTAAATAGGAATATAGTTTAAGGTATTGATTTGTAAGGATTTATGTGCTATTCTTTAATGTGATTTTTCAAAAGCTAAATCACCTGGGAAATTTTTAGAGAAATGTTGAAATATCAATGGGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTTTAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATCGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //