Array 1 257464-259077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJO010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS5368 NODE_3_450510_30_6497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 257464 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 257525 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 257586 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 257647 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 257708 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 257769 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 257830 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 257891 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 257952 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 258013 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 258074 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 258135 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 258196 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 258257 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 258318 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 258379 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258440 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258501 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258562 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258623 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 258684 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 258745 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258806 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258867 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 258928 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258989 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259050 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 275210-275849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJO010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS5368 NODE_3_450510_30_6497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275210 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 275271 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 275332 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 275393 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 275454 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 275515 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 275576 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 275637 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 275698 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 275759 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 275820 29 96.6 0 A............................ | A [275846] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //