Array 1 70939-73248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJL010000011.1 Anaerobutyricum hallii strain DFI.9.38 JGKALAAH_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 70939 33 93.9 35 .......T...........A............. TTAGTTACATTTGAAGTATCAAAATTACTAAAATC 71007 33 100.0 34 ................................. AGATATACAGATTGGAGCGAAATATTAGTAATTA 71074 33 100.0 34 ................................. TACAATCATCGTGTTTTCCTTTCTGCATACGAAA 71141 33 100.0 36 ................................. GAACTGGTAACGGCGATATGTTTATCGAAATGACGA 71210 33 100.0 33 ................................. TCACGAATGCAGTTAGGGTTTAGTTGCATATTT 71276 33 100.0 32 ................................. GCGGAAAATATTTCTAAGAAAGAAGATATGGA 71341 33 100.0 34 ................................. CGCAGTGACAATACAGTACAGCTATTTGGCAAAA 71408 33 100.0 35 ................................. TCCGCCGGGATCCCACTTGGGTCTCCCGGATACAT 71476 33 100.0 34 ................................. TTCTCGGCTCCCTCTTCTACGCCAACGATTACTT 71543 33 100.0 35 ................................. ATAATATCTAAGATTACAGTTAAAAACCATCAATA 71611 33 100.0 35 ................................. CAAGTTCCAGAATTTTCTCGATCGCATCGCCTACA 71679 33 100.0 33 ................................. TTGCATTGCCAAACCTGCATAACCTGCTCTTAC 71745 33 100.0 33 ................................. TAGCTGTATACTTTGTTGTAGCACCCATATTCA 71811 33 100.0 34 ................................. CGGCAAGTGACAGGATGTGAAAATAAACTAAAGC 71878 33 100.0 33 ................................. GGCTGTTTGGCACTTGATGCAACGGGAAATGAA 71944 33 100.0 35 ................................. AATGCTTTTGCTCAATTCGTTGTATCCGCGGGCAA 72012 33 100.0 33 ................................. CTCTGTGCATTCCACCAAAAATGTGGCTCGGTT 72078 33 100.0 33 ................................. TATGCATATGTTTTGTCTACAAATGGAGCATAA 72144 33 100.0 34 ................................. CTTTTCGGCTTGTTTTCTGTTGCTACTGCCATAT 72211 33 100.0 33 ................................. TTCTGCGGCTGTATCATCTGTTGGTGGAGATGT 72277 33 100.0 34 ................................. TATTCCTGCGAAAATATTGGTATGCAGGCGATAA 72344 33 100.0 35 ................................. GACCTTATGTCCTCTACTGCGTAGTTCCACGATGA 72412 33 100.0 34 ................................. CATCGCCAGAATTATATGTAGTTGCTTCCGAAAC 72479 33 100.0 35 ................................. CCTGCACCCAGTTTGCCCATACATAGCGGCTAGAT 72547 33 100.0 34 ................................. GAGGATTAAAGCGTTCCAACCTATTAGATAAGGA 72614 33 100.0 34 ................................. GCACCACGGATAGTACCCGAAAATGTATTGTAAA 72681 33 100.0 34 ................................. TAACGATTGTTTTTTTACCCTGCTGCCCCATTCT 72748 33 100.0 34 ................................. GAACAGATCTTAAAGGCTCTGCATTGGAAAATAA 72815 33 100.0 33 ................................. TACATAAGCAGAAAAAAGATAATAAGTTTTGAT 72881 33 100.0 36 ................................. CTATAATTCCTATTAATTCAACATTGTTGCTCAAAA 72950 33 100.0 34 ................................. CATAATCTGGAAGATACCCTTGCGGAGCTGAAAG 73017 33 100.0 32 ................................. TTTTTCCATTTCCAAAGTCACCCAAGAGGGAG 73082 33 100.0 33 ................................. CTATCTGCTTCGGTCTTGTCCTATTCATTGATG 73148 33 100.0 35 ................................. TCTATCAAGGCTTTAGGTGTGTTGGGAGCCAGAGC 73216 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 35 33 99.8 34 ATTTCTACTCACACATCCCGTGTGGGATGTGAC # Left flank : GTATCAACACAAGTTGTGTAGAATACGAGGCAGCTTTGCATAATGACCTTGTCCGTTCGTCTATTAAATTATAAGTATCTATCCGTTTCCACTGTCCAAAACCATACATCAAACCACATATGTCCGGCTTAAATGCAATAAAAAATAGCGGGAACTGGATTTGAACCAGCGACACCGCGGGTATGAACCGCGTGCTCTAGCCAACTGAGCTATCCCGCCATAAATATTGATAAAAATAAGTGGGACCTACAGGACTTGAACCTGTGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAAGATCCCACGTCATCAACGAATTTTATTATACTATACCCCTTGAAAACTGTCAACACTTTTTTTATTTTTTCAAAAATGTAACACATGATATACTTCTACTGCACATCTTGGCAATTCTTCCATATAATTGTCAAATGGAGAATTAGCCCCACCACTGAACAAATAATGTTTACCTTTTCAATACTTTTATTTC # Right flank : TTTTTCCATTTCCAAAGTCACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTACTCACACATCCCGTGTGGGATGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 110127-109068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJL010000002.1 Anaerobutyricum hallii strain DFI.9.38 JGKALAAH_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 110126 29 100.0 43 ............................. TAACAGCAAAGAGTTTGTTTACCGCCCAGTTTTCTTTTATCCA 110054 29 96.6 48 C............................ GCTAACCCAATACTTTTTTCACCAAAATTTGTTTCTGGTGAGAAAAAA 109977 29 100.0 38 ............................. TTTTTTTGTTATGTTTTTTATATTTGAATAATTTATCC 109910 29 100.0 37 ............................. ATACTCAATAGTTTCGAGTACATCAGAATCATAAAAT 109844 29 100.0 40 ............................. TCTCCTCCAGATACATCGATATCTAAATCAATATCGATTG 109775 29 100.0 35 ............................. ATTCCCATCCTTATCATATAAAAAGCTCATCCTAT 109711 29 100.0 41 ............................. ACCATCACCATTTAATTCATTAAATTTCCAATTTTTTATAT 109641 29 100.0 40 ............................. AAATCGCATTGTTGTTTTCACATTCCAAAACAGGAAATTG 109572 29 100.0 36 ............................. AGTAATAAGGTCTTAAATTATTCTTGTTTGATTTAC 109507 29 100.0 49 ............................. AAATAATCGGGAAACCATTTATCCAGGTCTTCATCTTTTTTGAATGAAT 109429 29 96.6 35 ...........................G. GATTTGATATATAACATAGTTTTTCCTTTCTGCCT 109365 29 100.0 38 ............................. GTACAGTTTACCTCCATTTAAAGCTGTTGAATAAAGAC 109298 29 100.0 37 ............................. GCGTTATGTCGATCATATGCATTTTTTCCAGCATCAA 109232 29 96.6 39 ...................A......... GTAGGAAAACTGTACATCTTACATTCTTCAACAATATTT 109164 29 100.0 39 ............................. ACTTGTTTTAATCCACAGCCGGTATCCTTACGAAGGCTG 109096 29 89.7 0 .....................GC...A.. | ========== ====== ====== ====== ============================= ================================================= ================== 16 29 98.7 40 GGATTACATTACCTATGAGGGATTGAGAC # Left flank : TTCCTGAAATTTTGTCGGAAGATCCAGCTTTATATTATTATGAATATATGGATACATCTAAATTAAATTCAGACAGGGGCAATACAACACAAAAGGGAAAAAACAGAAGATAATAAGAAGGGCATCGGGAACTGTGTCGATGCCCTTTTTTGGAGCGTGCCTCTAGGTAGTGTTGGTACTTCTCGCACTATATAAAATATGAGAAAAAATAATAATGTTGATAAATGTAAAAAAAGTCCGTCGACCTCTAATTCTGCATGAACAGTGCGTTTTGGACAGATTATTTAAACAGTATTTCATCAAAAAAGCATAAAAATTATGAAAAATGACTTAAAAAGTCTGTCGACCTATTTACATAATTAACCAAAGGTAAAAAACGTAGAAAATAAGCAGAGTTTAAGAAGAATAAGCATTGGAGGTCGACAGACTTTTTTGCAAAAAATGGGTTGAAAATGGAAGAAAAAAGAGATATTATAATAACAAGAGCTGATAAAAACAGT # Right flank : TTCTTCAATTTCTTTTTTTAAGAACTACAATTAAATATAGACATAAGATATGAAAGATGGTGGAATTGTGACAGAAATTAGTCTGGAGGCTATTTTTAATGCAGAAAATTTGCAGAGAGCTTTTGAATCTTTTGAAGGAAAAAGAGATAGCTGTGGAGCAGATGGTGTAATGGTATCAGATTTGCCGGAATACTGGAATGCAAACCAGGTGGTGATTAAGGATACGATTTACAGTGGGAATTACAGTCCGGGGATTGTAAAACAACGAGAAATCGTTTCTAAGATTGGAAAACATAGAATCATTTCTCAGATAAATACGATAGACAGATTTCTATTGAGAGCAGTGGCGCAAGTTATATCAGGAAGGCTGGATTCAGAGTTTTCAGAATATTCTTATGCATATCGAGAGAATAAAGGAACACTTGCGGCAGCAGAGCATGCGGCTTTTTGTATGCAGGAAGGGAAAAGGTGGAGTGCGGAATTGGATATTCAACATTTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTACATTACCTATGAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 57-890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJL010000042.1 Anaerobutyricum hallii strain DFI.9.38 JGKALAAH_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 57 33 100.0 34 ................................. CAGCTCCGCTATTCTCTGCGACTGCTGTTCTATC 124 33 100.0 33 ................................. CTCATGCCCTTTCCATGCTTCCGTACCCTTGGC 190 33 100.0 33 ................................. GGGTTTATCACAGCAATACATAAAAGATAAAAT 256 33 100.0 35 ................................. AAAGGCTGAGGAGGGACAGGTACAGGCATACACGC 324 33 100.0 35 ................................. AGTATGACATTTTGCCGTATTGTAAGGGTAAAATC 392 33 100.0 33 ................................. AGAAAGTGGAGAGAGGTATACCGGCACATCATG 458 33 100.0 33 ................................. ATTAGTACGGATGCCCCAACCAGTTATGACGTG 524 33 100.0 34 ................................. TCATACTGCTTCAGCTCATTTCTAGCATTGATCA 591 33 100.0 34 ................................. GTGGAATGTAGTTTTCTAATATCACTAACTCATC 658 33 100.0 33 ................................. ATAATTGTCTGTAATGGCTTAGGAAGTTTTGAA 724 33 100.0 33 ................................. TAATATTCCTCCTTATTTCATATCTTCTTTACA 790 33 100.0 35 ................................. TACATCTTCATACTCAATGACATCCGAATTGCAAA 858 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 13 33 100.0 34 ATTTCTACTCACACATCCCGTGTGGGATGTGAC # Left flank : ACACATCCCGTGTGGGATGTGACTTTTTCCATTTCCAAAGTCACCCAAGAGGGAGTA # Right flank : CCGCTATATATAGTATATTTCAATCACATTATTCCCATATATTACAGGATGGACCTATAATTCATTTAGAATTATATTAATTTTACCGTTAAAACGGATTTTTTTCAAGCGAACCTCCTAGATTTTTTTAATCACCAGTAGTTCGCCTGTTTCATTTAAAAATCAAATGATTATAACCCCTTCTGGATTATATGTCTTCTTTGCACCTATATGTTCTACTCTTCTCTCCCAATTATTCCCCAAATAATAAAATCGAAGACTATCCTCTTCCTTATCTATTAAATCCATAAGTTTTTCTTTTAATTTTAAAAATGAAGAATAATCTAAATCTGCCTCAAAAACAGAATTTTGAACTCTCTGGGCATGATTCTGACATTCTTTTGCAACTTTTCGTAACCGTTTTTTCCCCGCCGGTGATGTCGTACTTACATCATAACTTATCAAAACCATCATTATTATTCACTTCCTCGTTTTTAATATATTACTTAAGCAAAAATGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTACTCACACATCCCGTGTGGGATGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 111129-110300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJL010000004.1 Anaerobutyricum hallii strain DFI.9.38 JGKALAAH_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 111128 33 97.0 35 A................................ AAGAGAAGATTTATCAGCGAGAACGAGAATGTGCG 111060 33 100.0 34 ................................. TTAGTGTACTTCCCTGCCTGGTATGCCGCATATT 110993 33 97.0 33 C................................ TTTCCTGGAGACAAATTAGTGTTAACAAAATCG 110927 33 97.0 32 C................................ GAGAAGAGTTGCGTGTGTATGTCGTAAGCTGT 110862 33 97.0 34 G................................ TTCCTTGTAAAGTAGAAGATTTACCAGATGAAAA 110795 33 97.0 34 A................................ ACAAAGCAGGAGTTAATTGATAATCTTGTAGAGT 110728 33 100.0 32 ................................. ACGAAAACGAACTGAAATCCATGATAACCAGA 110663 33 100.0 33 ................................. ATAAAAAATCGGTGCTTGGCTGTCTCACAAACG 110597 33 87.9 35 G........T....T.......A.......... AGGCTGCTTATTTTTACTCCGCCGGAACTGGAGCA 110529 33 90.9 32 A........A....T.................. ACTTTTAGACTAAGAGAAAAGCCTTGCTGCTC 110464 33 90.9 33 .............C......TA........... GAAGAACTGCATCATTACACAAGATTACAGAAG 110398 33 93.9 33 C...........T.................... CCAGACGCTCTCCAATCTGTGACCAGTCATAGC 110332 33 93.9 0 C......................A......... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 95.6 33 TGTCGCCTCCTTCTCGGAGGCGTGGATTGAAAT # Left flank : AAGCAACCAAAAGAGATTGATATAGACGATACGGATCTGTAGATTTGGTGTAGACGAAAAAAGAAATACTACCATATCCCATCTGCTCTGTAGTCGCTGTGTTTAAAATGCTCATCCGCATCCTAAACACGCTCCGAAGCCGCATCTGGGATATGGTATTATTTCTTCTTTCTGTCTAATCGAAATCTACAGTTGGTGAGAATGGAGATTGCCAAAATCCCTTTTTCGAAAATCTTTCTAAATTTAGATATAGTCAAATGTAGAAAGAAAAAGTTTCTTATTATCTTATCTTCGTTAAAAGGAATACCTTGAAATAAAATATAGAAAATATTAAAAATTAAACATAGTGCGAATTATAAGCTACGCAAAAAACGCAGGCCATTCGCACTTAAAAAAGGAAAAATAGTACAATATATTGCGATATAAAGCTAAAAATAGCGGACAAAAAAGTTGTTGAGACTAGATATGTACATGATAGTTGAGGTATCACAATATGTTGC # Right flank : AGCTATAATTCGGTAAAATTTTTCTATAAAAAGGAAAAAGATGGCTAACGACAACCATCTTTTCCCCGTTCCATGTTATAAAAAAGTGATGGAGGATTTGGATTTTTCTGGCTTGTTAGCCAACTGTTCAGATAAGGGAAGAACTAGGTTTAACCCAAGTATGATGTATGCTGTCGTTACTTACGCAAATATGCGTGGGGTAAGAGCTGTTGACCGTATTGTGGAGTTATGTGAAAATGTGAACCGCTATACTTGACTGGACAGATTATGATACATTGATCCCTGTGTTAGAAAAGCACAAAAACGCATTTGGAGAGATTTTGGAAGAAGTAACTGCATTGCAACGGCTGCAGATATAAAGCAAAATGTCTCTATAAATATGATGCTGAAAAAGATGCTGAGAAAAATAAGGTCATGAAGATTAATGAATAATGGGAAGCCTTAAAAGAGGAATCCCATGCAAATATACAGAGTAAGAAAGAAATTTTAAATCGGCAGAT # Questionable array : NO Score: 8.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCCTCCTTCTCGGAGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18750-19311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJL010000050.1 Anaerobutyricum hallii strain DFI.9.38 JGKALAAH_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18750 33 97.0 32 G................................ GCGAATCAACACCACTGGAAACACCCATATTT 18815 33 100.0 36 ................................. GTACAGTACAACCTTAAACGGTTTCTGCTCGTCTAA 18884 33 97.0 32 C................................ CTGCACTGTAGGTTGTGTAGCCATCCACCTCG 18949 33 97.0 33 T................................ GAGGGCGAATTGTTGAGAAGTTTGGCTCACAAG 19015 33 100.0 32 ................................. TGCAAAACGACTAGAAATCTACATAGACATCA 19080 33 97.0 33 C................................ TGCGGATAATTTCTCAAATCCGATTCTTGGTCT 19146 33 97.0 33 T................................ ATGTGATATAAGCCCGGCTTTAATATCTTTGCA 19212 33 100.0 34 ................................. CATGATTTCTTTCTTGGTCATTTTCCCCGGTTCT 19279 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 98.0 33 AGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAT # Left flank : CTGTTTTTGAATGCATTATGGATAATGCAAAAACAAAGGTGGTAAAAGCAAAACTACTCGAAATAATTGATATGGATAAAGATAGCCTAAGATTCTATTATCTAGGCAATGCTTACAAAAATAAAGTAGAACACTACGGAACAAGAACAAGCATTGACTTAGAAGGAACCTTAATTATCTGATTCCAGGGCACAAAATAAACAATCGCATCTGCGACAAAATCCCTTTTTCAAAAATCTTTCTAAATTTAGATATAGTCAAATGTAGAAAGAAAAAGTTTCTTATCATCTTTGTTAAAAAGGAATACCTTGAAATAAAATATAGAAAATATTAAAAATTAAACAGAGTGCGAATCATAAGCTACGCAAAAAACGCAGGGTATTCGCACTTAAAAAAGAAAGAATAGTACAACATATTGCGATATAAAGCTAAAAAAAGTGGACAAAAAAGTTGTTGAGACTAGATATGTACATGATAGCTGAGGTATCACAATATGTTGC # Right flank : TAGGTAATCCGCACTACAGTTCTCGTTGTTGTTACATCGTCTCTTCGCAGAGATAACAATTACAATTCCTTACAAAATAACAAATATATTGATGAAAAATTCTACAAACATTTTATGATGGCAGTGCTATTTGACTGCTTTGCCTTTGTATATTAATTTTAAGCATGTCGTTCTTATAATAAGCATCTTCTTTAATTTTTCTTTCTCAAAAAGAGCATAAAAATAACACGTCCGATATATCGAGCGTGCTAGAGCGTGTTTGAAAAACATTTTAAGTTGTTCATTTTAACCAAATTAATATTGAGGTGATGCATATAAATGCTGCAAAAGTGGATGCTAATTTATCATAACGCGTGGCTATTCGACGGAATGCTTTTAACTTGAGAAAATAGTTTTCCACTAAATATCTTTCTTTGTAAAGATGCCAGTCACAGTAACGGTCAAATTTAGCCCCTTTTCTGGAAGGTATGGTTAGCTCACCACCATGGGCATAGATATAG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //