Array 1 51-1455 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHU01000080.1 Pseudomonas aeruginosa strain Pae_CF67.09p CF67.09p_contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 111 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 171 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 231 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 291 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 351 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 411 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 471 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 532 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 592 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 652 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 712 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 772 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 832 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 892 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 952 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 1008 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 1068 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 1128 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 1188 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 1248 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 1308 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 1368 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 1428 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTATAGGCAGCTAAGAAAAGAAAGCCAAGATCTACCGCTGGAGAAAGGCGG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11679-10330 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHU01000080.1 Pseudomonas aeruginosa strain Pae_CF67.09p CF67.09p_contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11678 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 11618 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 11558 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 11498 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 11438 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 11378 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 11318 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 11258 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 11198 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 11138 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 11078 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 11018 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 10958 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 10898 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 10838 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 10778 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 10718 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 10658 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 10598 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 10538 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 10478 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 10418 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 10357 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-137 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHU01000002.1 Pseudomonas aeruginosa strain Pae_CF67.09p CF67.09p_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 17 60.7 32 -----------................. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 50 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 110 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 86.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //