Array 1 4233-4658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOD010000033.1 Clostridium bornimense strain N41 No41_ctg033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4233 30 100.0 37 .............................. AAACCTTCTGTTACGTCATGTAGCTTAGTCCATGTTC 4300 30 100.0 36 .............................. ATATTTTGAACCCCTCACAGTGAGATTAACTCACAC 4366 30 100.0 36 .............................. GATTATGATTAAAAAGTGAGTGAGTTTATTGAAAGA 4432 30 100.0 35 .............................. ATCTAATGTCTTCTTTTACTTCTTTAACTTTACCA 4497 30 100.0 35 .............................. TCTAGCGGTAGAGTTAATGGAATAAACGGAAATGT 4562 30 100.0 37 .............................. TATTTAAATTTGCAAAAGTATTTAAGGCTAAATTTAT 4629 30 93.3 0 ................C...........T. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTGAAGAGTAACATATGATGTATTTAAAT # Left flank : TGGACAAGCGATACATTATGTATGATGTATTATCACAACTAAATTGTGTTACAGAAAACTTTACATATAAATTAAAAAGAGGACAAGTTATAATAGACTCAGCTTACCTAGTAGGGGGAGCAGATAATTTTGATGCAGCGATATTATTTGACATACTTATAAAAATGAAAGCTATAGTAAATAGAGATGCTATTCATTTGATTAAATTGGCTCATTAGAAAATTTAGATAGAAGAAAGCTATATTGACATTTGACGTTAAGGATATGTTGATATAGTTTTTTAGTAAGAATTAAAAGTATTTTATATAAGAAAGTATACTGTAATTTTACCAGGTGAAATTTAAGGTGATTACTTACGAATGCAGTATTTTCAAGGGTGTAGGAGAAGTTTTTTTTAGAGGTAGAAATTATTAAAGGTATCTGGTAAAATTTTATATAAAGATAGGTATATCAAGGGATAAAAGCATATAGTGTTTTTTTAGAATCCCTTGAATACTGAG # Right flank : TATTGAAACGTATATTTCAATATATCATTATTTAACTATAATAGATGTTAATACTAATGTAATTAGATGTAAAAAGCATACAAACAAGTATATATAACTTGTATTACGAACACCCTTTTACACAAGAAAAAAGCTGCTACACTTTTGTGTAACAGCTCCTACCGTTTTTTACAATTCTATTTCAAATGTCTTTGTTTCAACTATTTGAGCACTATCAAGGGAAATAATATCTCCACCCTTAAATGTAAAAACTCCTTTTTCCTTAACTAGTTCCATAAAGGCTTTTACTTTAGTATCATCAAGATCATCCTTTACTTTAGGTATAGTTATTGAAACCTTAGAACCAGTTTCTGTGATAAATTTCATTACTAATGACTTCATTAGAAATACCCCCTTTTTTAATTTTTATAAGATTTACCGCAGCGCTTATTTAACTAATAAGCTTTCATCGATTATTGATGCTTTAGAAAGAGTACCTAATTTAAGTTCGGCATAGGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 7010-6587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOD010000047.1 Clostridium bornimense strain N41 No41_ctg047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7009 29 100.0 37 ............................. TCATATCATTTGCAGCAGAACTGAAACCAGTATTCAT 6943 29 100.0 38 ............................. TTCTAAGAATACAAATAAGCCAATAAGTAGTAAGAAGA 6876 29 100.0 36 ............................. TTATACTTACCAGTTTGTTAATAGAAAACTCTAAAG 6811 29 100.0 36 ............................. ATTACAAATGTATATGTATCTAGTCCACTTATAGAT 6746 29 100.0 36 ............................. ATGGAGAAAAGACACTACAAACTTAATTAATAAAAT 6681 29 100.0 37 ............................. ATCATGTCTCCCCGAAATAGTCAAAAAACATGTAAAA 6615 29 93.1 0 ................T......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 99.0 37 GTTTTATATTAACTATGTGGAATGTAAAT # Left flank : ATTAGCTGGAATAAAAGTTAGATATGTAAAGGCTGCATATACAAGTCAAAGGTGTAGTAGATGTGGAGACATAGAAAAAGAGAATAGACAGGAACAATCCAAATTTGTATGTAAAAAATGTGGATTAGATATTAATGCAGATTATAATGCTAGTATAAATATAGCTCAATCAACTGAATTTATTAAATAAAATAAATTACGGTATATTTAGATGCCGAAGGGTGAGGGAATGGATAAAATACATAAGGTTTTTACCAAATATGCCCCATTACCACTCACTAAGGGTTAGCCTAGGTGTTATGTTACCGCCTAGCATTCTAAGATAGTTAAAAAATAAATTTGCAGTAGATGATCTTTTATAATTTAAGAGTTAAAACATAGTTATATCAATGGATAAGGCTATATTTACAGTAAATCAATAAAATCTTACTGGAGGTTTACTGCAAAATATAGCTTTGAAATGATAATGAAGTGGCTATTCTGCTGAGTTTGTAAACGGG # Right flank : TGAGCTATAAAATAAATTTTTGATTATGTATTTTAAGATTTTACTGTTAATGAAATAAAAAACGATTAAAAAGAAAGTTAAAAATAATTATAATGCTTTGAAAAAGCTAACTAAGATATAGTTATATATTTTAGTTAGCTTTTTTGCATATAGAAAACTAGGAGGTGAGGAATATGGCCACAGCTATAGTTTTAAACAGCACTATTAATCTTAAATATGCAATAGAAAAGGATGGAGCCACTAAGATTAAGTCTATGACTTTATCAGGGCTTGGTGAAAATGCTGATATTAACAGTATTAAGAAAACTGTTGATGCGATTTCTATGTTGCAGGTAGGTGAGCAAGTGGAGGTTAATCGTGTTAAGAATAGTTTTTTATATTAGTTTAAGGGGGTAGGGTACTTTGAATAATGTTCTTGTACTTAGTTTTATTGTAGAAGATGGCAGCAAGTTTAATATTAGAATAACGGATCCAAAGATGAATCTTAGTGAAGATGAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 38015-39611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOD010000009.1 Clostridium bornimense strain N41 No41_ctg009, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 38015 29 100.0 36 ............................. AAGTTTTGACATTGCTTGTTGGAATTCCATATTAGC 38080 29 100.0 36 ............................. TTAAAGTAATTTGCATTACCTAAAGCACTATCTTGT 38145 29 100.0 37 ............................. AAACTTGTTAAATATTTAATCATGTAATAATACATGT 38211 29 100.0 36 ............................. ACTTTCTCCATTATTCAAAGTTATTTCTGAAACACT 38276 29 100.0 35 ............................. CACTAAAAAGAAATGCATTAACAATAAATATATCA 38340 29 100.0 36 ............................. ATTAGGCACTATACTTTTATTTTCCATAATTTCCTC 38405 29 100.0 36 ............................. TGCTTCTTTTATTCCATCTATACCAGCTTTAAAGAA 38470 29 100.0 37 ............................. ACTGAACAAAGTGCGGCGGCTATGGAAGCGTTAGGAC 38536 29 100.0 36 ............................. AAGGATTATAAATTAAAATTTATATTTTGGAAAGCA 38601 29 100.0 36 ............................. ACTAACTTAACTGTAAAAGACGCCATAGCATGGATA 38666 29 100.0 36 ............................. CTAGAATGTGTATGTGTTTTACTACCGCCTGTTTTC 38731 29 100.0 37 ............................. TGTATTATTAAACGATATGGCTGATTCTAATAGTGTA 38797 29 100.0 37 ............................. TCGTATAATTCATTTAAACTATCTACTAAGTATATAA 38863 29 100.0 37 ............................. ATATTATTATCACCTTCGTTTACAATAGCAAGTAATT 38929 29 100.0 36 ............................. ATATCTAATATTGCTTTTCGACCTTTTCTATCTTGT 38994 29 100.0 36 ............................. TTTGTGTTGTTGTTAAGCATGTTTAAAAAGTTCATC 39059 29 100.0 37 ............................. ATGAGAATAATATAGATGGTCTAAAAGTTGCTGGAGC 39125 29 100.0 36 ............................. TTCTCTTAAATTAGCTGTCATTACTATTTCTGTTTT 39190 29 100.0 37 ............................. AGAATTAGAAAGGCTTTACTTGCAGATGCAAGAAATG 39256 29 100.0 36 ............................. TTTACAGTTCTAAAAGCTGAGGGCAAATCACACAGA 39321 29 100.0 38 ............................. AAAGATATGGGTGGTATGGGATTAAGATTTATAGCTAC 39388 29 100.0 36 ............................. TGTATAGAAAGTGGAACATCTAAAAAGATAGATTTA 39453 29 100.0 36 ............................. AAAACACAAACCACTGAGTTAGAATTTAAGGCATAT 39518 29 100.0 36 ............................. CATGATTATTTAGGCACATACCACAAAAGAAGATTT 39583 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 100.0 36 GTTTTTTATTAACTATAAGGAATTTAAAT # Left flank : AGATATATATGGAATAATTACAGATAATTTTACTGGAACTGATTTAATGTTTAAATTTGAACCATATAAAAATATAGTAGATAATAAGAAAAAGGCTTCGAAGTTATTTAGGGATATAGATATTACGTATAAAGTTATATTAGCAAAAGATTTTGCAAGTACAAGTAATAGAAAAGATGTACAACTTAAATCTATACAAATATCAAAGGGGATTTTTAACAAGTTATATGGTATGAATCTTGTAGAGAGAGTAGAGGGATATTTTCTAATAAAAGATAGTGATAAATATAAATATACAGAAGATGAAGGATTAATATTGCAGTAAATCATATTTTAGTATAAACATTAGAAAACTATTGGTATCATTGACTTTGAGGATGGTTAAGAGCAATTGAGATATTTCCTACTAAAGGTTTACTGCAAAAATAAGATTTTTACTAATTACTTTTTATGATGAAACCTAGTAAAATAGCTACTTTAAGGTAATATGTAAATAGGGG # Right flank : TACTACTACACTTATAATTATATATTATTAATAAGTATAATCATTTTTGGGGAACACTACTATATTATAAATTAATATAGGCGGTGCAATATGAAGAAGAATAAAATAGAAAAGTATAGTAAGGAATTGATAAAACAAGTTTTTAAGTGGCTTATTCTAAGCATAATTATGGGAATCGCCATTGGAATAGTAGTAGGGGCTTTTGATAGAATATTAGGTTTTGCTAATAAATTTAGAAAGAAGAATCAGTGGTTAATATATTTTTTGCCTATTGCAGGAGTAATAATTAGTTTTATATATGTTAGAGTAAAAAGAAATGCGTATTCAGGAGAAAATTTGCTAAAGTCAGAAGTACAAAGTGCTGCAAAAGATATTCCTATATATATGATCCCTGTAAGTTTTATAGGGTCATTAGCAACAACTTTTTTTGGAGGATCAGCAGGTAAAGATAGTGCTGGTGTGGCTATGGCAGGAACCTTTGGAGATTTTTTGGCTAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTTATTAACTATAAGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 6783-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOD010000085.1 Clostridium bornimense strain N41 No41_ctg085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6782 35 86.1 29 A....-.CCA.......................... AGTAATAAAAGAGTGTATAATTTAAGAGA 6718 36 100.0 30 .................................... CAATCACCAAGACTAGGCATGTGACATCCA 6652 36 100.0 30 .................................... CATCAACTGTAGCCACTCTATTACCTCCTT 6586 36 100.0 30 .................................... ATTGCAAGATGAAACTAAAGAAAATAAGAG 6520 36 100.0 30 .................................... TATATCTTGTCCTGTTAATTCTTTAAGTCT 6454 36 100.0 30 .................................... CCAATGGGTATATACGAAGCAAATATTAAA 6388 36 100.0 30 .................................... ATAGTAATATTGTTAAACTAGAAGGTAATT 6322 36 100.0 30 .................................... AAAAATGGAATTTTAAATATTGAACTTGAA 6256 36 100.0 30 .................................... ACTAAAGAAACAATAGGTAAGACAGTGATG 6190 36 100.0 30 .................................... TTTAAATACGATTGATACAGCTGCAGAGCT 6124 36 100.0 30 .................................... AATTTCCAAATCATATGATACTCAATATTT 6058 36 100.0 30 .................................... AATATGATGGTTCTTATATAATGGATTGGA 5992 36 100.0 30 .................................... AACTGGTTTACATGTAAGGATAAATTATTT 5926 36 100.0 30 .................................... AGAAGTGAACGATAATTACACACCATTTAA 5860 36 100.0 30 .................................... AAGAGAACGTATTGAATTATTAAAAGCTCA 5794 36 100.0 30 .................................... CGGCAAAAGTTCAAGGATGGACAGATTAAT 5728 36 100.0 30 .................................... TGGCTTTAAGAAAGTAACTGTTTTTGATAT 5662 36 100.0 30 .................................... ACTTCTATATAAATACAAAATATCCTTCTA 5596 36 100.0 30 .................................... CACTATTGATAATAGTAATAACATCACCAT 5530 36 100.0 30 .................................... TTTAGGACTAGGACGAGGTTTACCATACTT 5464 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : CCCTGTAAAATTTTGGAATCAGAATGAGCTTTATTAAAGTTACCCTTTTTTTAATAAGACAAACTAGAAAATTTCCAATTTTAAAGTTTTTTTATCTTGACATATTACCAGTCGTCTTTAGTTTACATTTTTTACTATAATTATATCATATGTAAAATAGTTTTTTGATAAGTTTAATTAATTTAATTTATATATAAAAATATTTGGAAATAATAAGACAGTTTTAAAAAAAAGAAATTGCACTGATAATAAATCATATTATTAATTTATATACTAAAGAAAGTATCTGAAATAATACTTATTTCAAATACTTTTAAAGTTACATCTTTATTTATTTTTGACATCTATAGTAAAACACAACTAAA # Right flank : TAGGAACTGTAAACCCCCTTGAAACAACTAGGTTTCAAGGGGTTTTTACTTTTTAAAAAACATTCATTATGCCAGAATTAATAGCTTCCTCTTGCTTTTTTGGCGACCCTACAAGAAATTGCATATCAGCATATTGTTTTTCTGTTATTTGCAGAAATCTTACTGATCCTTTCGGCGGTAAATTCTTTTTTAGTCTCATTATATGTTTATTGCTACCTTCAATTCCATTACATATCCTAGAGTATACAGAGTATTGTAACATTATATAACCATCATTCAATAGAAATCTTCGAAAAATTGCATATTCTTTTCTATCTTCTTTCTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATTTTTTACTCATAATAATGATATTCCAGTGGTATTATTTCAGGTAACTTTAATAGTCTAAAATCTTTTTTACTGCATGCTGTTGTATAAGATGCAATCATTTTATCTATACCATTTAAAATGGAATGCTTTTGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //