Array 1 40934-37261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJK01000028.1 Streptomyces mediolani strain NRRL WC-3934 contig28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================ ================== 40933 37 89.2 35 ..............AT...A..A.............. AGCCCCGACAAACGCAGCGGGCTCGTCGGCTGGAC 40861 37 94.6 37 ....................C..T............. ATGGCGTACGCGCGGGCGAACGGCCCGGCGGCGGCCG 40787 37 100.0 35 ..................................... ACGCTGTTCGTGCTCCTCACGGACACCGCCGAGGG 40715 37 97.3 36 .....T............................... ATCCGCAACGACGCCCGTCCCGGCGGCGTCGTGGCC 40642 37 91.9 36 ...............A....C.A.............. CAGATGACGCTGGCCGGGGCGTGCGGGTACGACGTG 40569 37 91.9 36 ..T...................A.............T GTACGGGTCTTCCGACGGCGTTTGCGGGCCTTGGGC 40496 37 91.9 34 ...................AC........G....... TACGGGCTGGAGATCTTCAACCTCGGCGACAATA 40425 36 89.2 32 .......-......T.....C.......C........ AGGCATAGGGCCCACTTGCCTCGGGTGCGGGA 40356 37 81.1 36 ....T..CG.T.GC.G..................... ACGACGTAGCCGTGACCGAGGATCCCGTCCGGGGTG 40283 37 94.6 36 .................A.....T............. ATTTACCACGTCGCGATGTACGCCGGCGACGGCAAG 40210 37 91.9 35 .........A.........AA................ ATCGTCCACTCGATCATCGCCCCGTGGACTGCGAA 40138 37 97.3 35 .....T............................... CTGATCGCCGGAGGCACTGGCTCCGGCAATGGGGA 40066 37 86.5 36 ....T...T...T.......C.A.............. TCGATGGGCGCCGGGGTGCCTTCAGGCCACCAGCCC 39993 37 83.8 37 ..........T........ACC......AT....... TCGTCCACGCGGGGGAGTCCGACGTCCGGAGCCAGGC 39919 36 86.5 67 ................A.C-C.......A........ TTCGCCGCCTACGCGAGAAGCGACACCGAGACCATGTGGCGGCCGAAGAGCTCCTCCTCATGAAGGA G [39905] 39815 37 75.7 0 ........T....CG.....CAA..........TGG. - Deletion [39779] 39778 32 75.7 36 -----.........T....AC.A.............. TCGGTGATCTGGTACGCCCAGCCCGTCGGCTGCATG 39710 37 97.3 35 ..............T...................... CTCGCTGTGCCGCGAGAGCACTTCGCGCCCGCCCG 39638 37 97.3 36 ...............A..................... ATGCGAGGCGAGCGAGCAATCGCCCTGGCCCTCAAC 39565 37 89.2 34 .............C.TC...C................ CCCGGCCCGGCCGGACAGCGGGCCGCAGCCGGCC 39494 37 91.9 18 T...A..............A................. ATCGCGGTGGTCCTCGTC Deletion [39440] 39439 37 70.3 35 A..TAC.G..A.AG..T...C..T............. CAGCCCTTGCCTAGGACGTGCTGGGTCACCTCAAC GT [39419] 39365 37 81.1 76 ....T.....T...T...A.C.A.........A.... TTCTCGACCCGGGTGGCTGCGGGGGCATCCGCAGATTGCAACCTCCGGGTGCCGCCCGCGCCACGTGGTGCACCAC 39252 36 86.5 35 .....-.CG.....T.......A.............. CTTGTCGAGCGTCATGGGGATTTTGGGGAGCGCGG 39181 37 91.9 36 .........A..........C....A........... GTCTCCAGGACCGCGTACGCCGCCATGCGCCTGGTC 39108 37 70.3 36 ........TA....T.AA..C.A.TCC.........T ACCACCGGCACCGGGTCCGCTCAGCTGGAGGGGGTC 39035 37 97.3 36 ....................C................ ACCGCTCCCGAGGGTGACGAGGCGGCCATGCAGGGC 38962 37 91.9 27 ................A...C.A.............. CACCCCATGTACACGCCGATCGGCGGC Deletion [38899] 38898 37 89.2 36 ...........T........C.A......G....... AACGACGCCGTGATCAACGGTGACACGGCGGTCGAC 38825 37 91.9 35 ...............A....C........G....... CTGGAACCCAAGGGCAACGACGCCGTCGTCCCGCT 38753 37 97.3 36 ........T............................ TTTCGATGCCGTCCGTAGGGACACCCCCGCATCGGC 38680 37 100.0 38 ..................................... GACCTGCGGGCCCGGGTCGACGGGCAGCGTATCCGCGG 38605 37 91.9 35 ............................C.C.A.... GCGTTCGCGGTAACCAGACGCACGCCGACCAGTTG 38533 37 86.5 35 .......C..T.....A...G.A.............. CGATATCGGAGTCCCGGCTCCGGGGCGAAGTACCC 38461 37 94.6 37 ...........T........C................ CTGTACGCCGACGGAGGGGACGGAGGCGGTTTCGGAT A [38431] 38386 36 91.9 36 ...............G....-.A.............. TCCATGACGCAGTTCCGGGCCGACGTTCGCGCCCAG 38314 37 89.2 34 ...........T........CAA.............. GACGTAGGTCTGGCCGTGGGCCTCAGGCACGGGG 38243 37 91.9 37 ....................C..........T.T... GGGCTCCTCATGCGGCAGGTGCACGGCCTGGTGGCCG 38169 37 97.3 36 ................A.................... GCCAGCTGGACCGAGATCGAGCGAGAGGGATACCGC 38096 37 94.6 38 .................C..........C........ ATCAACACGCGGATGGTCGAGGGCGTCAAGTACAGCGA 38021 37 83.8 35 ...T........T...A...C.A...T.......... GACTACTGCGTCGAGGCCGACTGGCTGACTCCGGT 37949 37 73.0 36 ........TA....T.AA..C.A.TCC.......... ACCACCGGCACCGGGTCCGCCCAGCTGGAGGGAGTC 37876 37 91.9 36 ................A...C..............G. ATCGAGCACACCCAGCTGTGCCCCCCGTGCCGGAAG 37803 37 86.5 35 ...A.....A......A...C.A.............. TCCGCGTACCAGGGGCGCAGGCCGATCTGGACGAC 37731 37 89.2 37 .....T........T.A...C................ AGCCGCCGCCTGTACCGAGGCGAGGACGGGACGCGGA 37657 37 86.5 36 ........T.....G.C...C..........G..... GACAAGAAGGTCCCGGGGGCGTGGCTCGTCGACCTG 37584 37 86.5 37 ..............T....AC.A......G....... ATTCCGATCGTGCACGTACTGAGTACCGTGCCGCCGG 37510 37 91.9 35 ...A.......T..........A.............. AACGTCCGGGAAGCCGACATCAGCGAGACGACGAA 37438 37 91.9 36 ..........A.......A.C................ GCGTTCAAGCTCGACGACGTCGACAGGGCGCAGGTC 37365 37 83.8 31 ...........T......A.CA...A.....T..... GTCCCGTCCTTGTACGTGGACAGCGCTGCGG 37297 37 75.7 0 ....T......GT.A....AC.A...C.A........ | ========== ====== ====== ====== ===================================== ============================================================================ ================== 51 37 89.0 36 GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Left flank : GATCGTCGTGCAGTGCAAGCTTCGCAGGGCGCCGTCGGCTGCGATCGGAGCGCCGGATGTGCAGGCTTTCAACGGGACAGCCCGCCCCGACCATGACGCCAGCCACCCGATCATGGTGACGAACACACGCTTCACCGTGCACGCGGAGAGGGCAGCAGCCAGGTATGGAATCGCGTTGGTGGACAGCATGGCGCTGCGGGCGTGGGCGACGTTCGGCAAGCCCTCGAGCTGACCTGACAAGCCGCCGGGGTTAGACGATATGGACGCCTTCGGTGTCGCCGTTCTCGTCGCGTAGGAGCACTTCTTTTCCGTCGGCCACCAGCTGGGCGAGGAGGCGTAGACCTGGACGGCCCGGTTGATGGAATCGGTTTTGGACAGGCCGGTGATCCTCATGAGTGTGGTGACCGTTTGGGCTGCCCTGGGAATGAGTGTGACGTGAACCGCCGCTGGCCGAGGATCGCAACGACACCCAGGGCGTGTCCCAGGCCGAGCGGGACGTG # Right flank : GGCTGTGTCAGTGGCCAATCTTAGGGTGTGTCGGTTCCAGGGAGGTTGGTGATTCGGCGGTCAGGAGGTCGGGTGTCAGAGCGTGGGTTGTTCGCCCATAGTCGTAGTCCGCGGTCGGGGTGTCGGCATCGGCTCGAGGATCATCTGCGTGGCTCGGCTGCTTTGGCCAGGGTCTTTGCCGAGCGTTTTGGTGCTGAGGATGTGGCCGGGTACCTGGCGTTGGTGCATGACGTGGGGAAGGGGTGTTGTGCCTGGCAGGATCGCTTGATCTTTCATGCTGAGCCGACGGGTAAGCCGGTGGGGATCCCGCATAAGGAAGCCGGCACGGTGCTTGCTGCGCGGACGGTGGGGCGTCAGCTCGCTGCTGTGGTGCAGGGGCATCATGGAGGGCTGCCGGATCAGGACAAGATCAAGGATGTTCTGGCCGAGCTCCGGGGGAGCGGTGTGGAGGCGGACCGTGCTCGGGAGGCGACCGAGGCTGTGGCCCGGGTGGTGCCGGA # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-16.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [75-73] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43226-42759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJK01000028.1 Streptomyces mediolani strain NRRL WC-3934 contig28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 43225 37 89.2 36 ..............C.A.G....T............. CCCTGTCCTGGCCCTCGGCTGATGTGGGCGCCGGGA 43152 34 83.8 35 .A........T...C...---................ CTCGGCCTGCCGGCCGACGACGTGCGGCTGCTGGC 43083 37 86.5 36 ....A.....T..AC...G.................. TTCACCAGTGCGGCAACGATACTCCCCGAGAGGCGG 43010 37 100.0 36 ..................................... CGCAAGACCGACCCGAACGCCGTCGTCGACGGGGCG 42937 36 89.2 36 ..............C...-.............A...T TACGCCCTCGCCGTCTGGATGGACACCCACCAGCAG 42865 36 86.5 34 ..............C..CG.-..T............. GCTCTTGCGGCGTAAGCGGCTCGGGTTCGCAGGG 42795 37 86.5 0 .........T...C....GT..G.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 88.8 36 GTGGCGGTCGCCCTTCGGAGCGACCGAGGATCGCAAC # Left flank : TCGACCCGGTCTTCGATCTGTCGTCGTACGACCTTTGCCGCACGTTCGTGGTCCCAGGTAGGTGACACGGCCTCGATGATTCCCTCGATGATTTCGACTCGGTCTCCGCGGATTTGCTGCACCGCGAACTTGAGGGCACGCTCAGTGTCGATGCCTTGGCCGTAGTCCGGCGCGCTCGTCATTTGTCCCGCTTCCGCCATCGCAACTGCTGGAGATACAGCTTAGGTATTTCAGGCGCTCGTCACGAGGAGTTGCCGTTCGGCTGCCTGCCGCAGTCCTTTGTCGCCCCGAGAGGCAACCACCTCTGGGACGCAGCCGCTCCTGCGGTGAGCGCCCGTTTTTTCGGGTGTGGTCCAGGCGGAACCGAGGCTGGGTTGTGACCTTGGTGTATCTGCCAGACTCATCCCACCTCACCTCATGGCGATCGCGTGGTACTTCCCGACCGCTTCGGAACCGGAAACACACACGACACGCAGACTCTTTGCCCTGCTCAGGCAGGG # Right flank : CTGTGGTCCGGACGCGACGTCGCCGCTGGGGCGTGGTGGCGGTCGCCCCTTGCGTTGGTGACCTCGGCCTCGTGGTAGTAGGACATCCAACTGCCTCCGCTGGTCGTGCACCGGTCACCCAGCTCCGGGCGGTGACCGCTTCGGCGAGGGAGACTTCCTGACGGGTCGGACAGCCGTCGTCGTCCTCGTCGACCCAGTGCTTGAACGCATCGCGTTCATACCCAACGCGCTTCTCCTTGGCGACGGGGATTTTCCTTATGGCGTCTGTGAGGGTCAGGCCCCCCTCGTCCGGGGCTCCGCCGGGCGCGCCGGACGGTGCGGTGGTATCGGTGGCGGAGGGATTGGGGTCGTCGGCCTCCACTGGTTCGGTGGAGCAGGCTGTCAGGGCGGTCGAGCGGGCCCAGGGCGGACAGGAAGCCGATGCGGCGCAGCGGCACGAGGGCACCGCAGGATTCCGGCAAGCCGTTCACACGCCGGCTGGTGCTGCGCTGCATCGAAGG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGAGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.60,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 45939-44392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJK01000028.1 Streptomyces mediolani strain NRRL WC-3934 contig28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 45938 37 94.6 36 ....................C.A.............. AGCCGCCTGCAGGACGCCTACCTCACTCACCTCCGT 45865 36 97.3 38 ...................-................. CTCTGGTACGGGCTGGAGGAGGAGATCGAAGACCAGAG 45791 36 83.8 35 A..........A..T....C-.......A........ GACACCATGGACGGGGACAAGCGGCTCCGGCTGCA 45720 37 89.2 36 ...............GAA..C................ CGCGCTCAGCCCGGCATCGTGGTGCGGTCCGTGCTC 45647 37 86.5 35 ..........T...T....AC.A.............. AGCGGCCGCGTCCCCGTCGAGGATCCCGGCACCGT 45575 37 97.3 36 ............T........................ ATCGAGAACACCGCGGCGTCGCAGGGGACGCTGCGG 45502 37 100.0 38 ..................................... CGGGGTCAGTAGCGGGGTGCCGTCCGCCGGGCGCCCCA C [45488] 45426 37 100.0 35 ..................................... AACGAGGCGCTCGGGGTGTGGGATTCCGAGGAGCT 45354 37 100.0 35 ..................................... AACAACGCCCATACGCGCGCCCTGTGGATTTCCCC 45282 37 100.0 38 ..................................... CCCTGGACCACCTGGTCCCCCGCCAGGCTGCCGAGCAG 45207 37 100.0 37 ..................................... TCCACCGTCACCAACTCCAAGGTCTGACCCGCATGGC 45133 37 100.0 35 ..................................... ACCGACGAGGACCTGGGCGTGCTCATCCCGTGGTC 45061 37 100.0 37 ..................................... CGCAGGGCGTAGGCGGCTGCAGCCGCGTCCTGAGCGG 44987 37 100.0 36 ..................................... TGGTTCCTCGTCATCGACGGCGACGCCTACAAGGGG 44914 37 97.3 37 ..............T...................... CACGCGTACTGGCGGGAGATCATGCCCGAGGCCGGGT 44840 37 100.0 35 ..................................... GTTAGGCCCCGCGCCTGTTACCGATGATCCCCGAT 44768 37 97.3 36 ....................C................ GCCGAGGCGGCGACCAGCGCGATCGGCGCGGCCCAC 44695 37 94.6 36 ....................C.A.............. TCCTGCGACGTCTCCGCCTCGCTCGGCCAGCAGCGC 44622 37 91.9 105 ................A...C.A.............. CGCTTTTGGGCCTGGGCGACGACACGGGCCCCGAACGTGGCGGTCGGGGGGGACCCGAGGATCGCAACAGCCAGTCCGGGCCCCGGCCGCATAACTCCGCGAGGG 44480 37 89.2 15 .................C..C.A.....A........ TGATCAGTGCGTCAC Deletion [44429] 44428 36 73.0 0 ...A..CA.....-.T....CT.......GG.....G | T [44419] ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 21 37 94.9 39 GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Left flank : CTCGTCATAGCCGATGTGCCCCGGAGCCTGAACGCCAGCGAAGCCCTCCTGCGTTCTCGGCCGACACGGCTCAGGGCTTGTCAGCCCGCAAGCGTCCGGTCTACCGGTGCAGGGCGTAGGCCGTGGTTCCCCGCGGCTGCTCGACCTCACGGCCCACACTCCGCTCCGAGCGCGTCCGCAGAGCTGGCCGTGATGGCATCGGAGGTCCGGCAGAACCCATTGAAGCCGAAGTTGATGTTGTAGCCTCCGGTGTTGAGGTTCTTGCCCGGCACTGCGCATAGGACAACGCATCAGGAACCCCCGGACCGGGACCGGAGACTCCGACGCTTGCCGCGAAGTTCTTTCGGTTGTGGTGCCAACCTCCAGACCGCTTCGGAAGCGGAAGCACACACGCGACACGCGAACTACACCGAAGCTAGATGCCCGAACCCACCAGAACTGTCGCCTCCAGCAGGCTCCCTCTACGATGGGCGCTACGCTCTTTGTACTGTTTAAACAGG # Right flank : CTGCTCCGCATCCTCACCGAGACCATGTAAGACGACCTGGTTGCGACCTTCGGCTGCCCGCCACCTTCCACCCGCCGCTCGTAACCGACGCAGTCGTCGACGTTGTGATCCTCGGTCGCCCCGAAGGACGACCGCCCAGGACGGAGGGTGGCTTGCACGTCCCGTTCCATGCGCCCGTTGCGATCCTCGGCGGTCCCAGAGCGCGACCGCCACAGGATGTGGTGCCCGCCTTCGGCAGCGACTTCACCTGTGGCAAGCCTCGTACGCCCCAAAGCAGGTGTCGTCATTTCTCACAGGAGGCCAGTCGTGTTGATGTCGATACTGAACGGGGCCGGCAGGTGAAAGGTGGTTCCGAAGGGGTGGGGGCCGTCTGCGCGGGTGTAGCCGAGCTGCCCTGGTGCGGAGAAGAGAGTCAGGCTCTTTTCCATGCGGTCGACCAGAAGGTAGAGGGGGGCACCGTACTCTGCGTACCGTCGGCGTTTGACGATGCGGTCGGTGTC # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-16.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [22-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 48754-47485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJK01000028.1 Streptomyces mediolani strain NRRL WC-3934 contig28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 48753 37 100.0 34 ..................................... GACTGCTGTTGGTGCGAGGGCACGTCGTGGACAC 48682 37 86.5 35 ....A....A.....T....T.G.............. GCCGTCGGTTCGATGCGCAGCGGCAAGAATGACAT 48610 37 91.9 35 ...................AT.G.............. TGGTACTTCGTTCCGCCCTGGTGCAGCGGCAGGTG T [48590] 48537 37 83.8 36 .......G.......GAA....G..........G... CTGCTCTACGTCGGGATCACCGGGGCGGGCATCCGC 48464 37 94.6 34 ...........T........T................ TGCTGGGCGTCCGCAACTGCCCGGGTGGCGTCGG 48393 37 100.0 35 ..................................... GTTGAGGCGCAGCGACCGGCGGATTCGAGAATGCC 48321 37 94.6 34 ....................T.G.............. TGGCTCGACCGGGCGTTCCAATGGAGTCACACCG 48250 37 83.8 36 ....T.................GT.A..C....T... TCTCGCTTTGAGCGCGGCTATTGCCGCCTCGGACGG 48177 37 81.1 36 ..........T..AATA....AG.............. GACACGCTGGACGGCGACAAGTGCATGAGGCTCTAC 48104 37 83.8 37 ............G.GAA..C.....A........... GCCCACCGGGCGTGCGGCACGATGAACGTGGTCGAGG 48030 37 86.5 35 .G............T.C..A..G.............. GTCTCCTGGACCGCGTAGCCGCCATGCGCCTGGTC 47958 37 73.0 36 ....T...TA....T.AA......TCC........G. ACCACCGGCACCGGGTCCGCCCAGCTGGAGGGAGTC 47885 37 91.9 36 ..........A.....C.....G.............. CTCGCCGGGCCCGAGTCCCTGCCCGTGAGCTTCCGC 47812 37 89.2 35 .A............T..A...............T... CTGCAGTCCGGTGTTGGCCGGACGCGGGCCTACTG 47740 37 97.3 36 .................A................... ATTGAGGACGTACTCGGCGAGAGCATCTGGAGCCGC 47667 37 89.2 35 ...........T....A...T.G.............. ACCAGCTCATCGCGCTCACGGCACGACTGCCCGAG 47595 37 91.9 37 ...........A..........GT............. GAGGAGAGCGTCCTGCGGTCGAGCCGGGACGCGCGGG 47521 37 94.6 0 ....................T.G.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 89.7 35 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CCGGCCTTCTCGCGGCGGCCAGGGTCGCCGACCTGAGCGACCCGGCCAGCATCGCGGCCGCCGCCGAGGCCCGTACGGCCATCGAGGACAGCACCGCCGCCGCGTGGCAGGAGTTCCTGGAGATCACCGACGTGGCCACCCTGGAGGCCGATCCGCAGGCCACTGCTGACGCGTACGCGTTCACCGCGTTCCAGTCCGCGCAGCAGGCCGTCGGCACGTACAGAGACGACGTCCTGGCGGTTCTGCGCCGCACTCCGGAGGCCGAAGCCGAGGCCCGCAGGGCGTATCGGGCGGAGCAGGGCCGACCCTGGTTCCAGCACCACCCGACCGGCGCGGATGCCGTCGCCGCCGCGACGAACGCCGCTGACGCCGCTAGGGAGCGTGTAGCCGAGCACCTGCTGGCGGCACGACTGAAGCAGCTGCACGAGCAGGCCGCCCGCACCGAGCAGGCCGTAGCCGCGCAACCCCTGGACGATCAGCGACAACCAGTCCAACAGCGC # Right flank : CTGCCGCTCGTCGTCGGCGACTCGCAAGTGCTCGGGTGGTGGTCGCCTTCCAGAGCGGCCGAGGGCTGGGACGAGGTGGTCGCCACCAAAGCGTTCACCGTGTCCCGGCCGGAATTGGCGCTCGACATGATGCGAGGCTTGGCCGAAGGGATGGCCGCCTACTCCGCCCGCCAGGCCGAACAGGGCCTCGATGACCTGATCGACTCCGACGCGGCCGCCGACATGGCCGCTTTCCTCGAAAGGGGTCCGGCATGACCGACACCGCACCAACGTCCTTGAGCGGCGTGGACCTCGCCCACGTCGTGCTCCGTGCTGCCCTCGCAGGCGTGAAGTCCGCACCGCGGCAGCGCCCTCGCCGTACCGGAGCTGCCCCGTCCCGCCAGGCCCGTTCCGGAGGGAGGGAGCCCATGGCCCTGGGCGCCGCCGTCAGCCGGATGATCGCCGAGCAAGCCTTTGAAACTGGAGCAGTCGGCGGTAGGGACGGCGCACCGTGCTCAGTC # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //