Array 1 259-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBC01000005.1 Pediococcus inopinatus strain DSM 20285 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 258 32 100.0 34 ................................ TAGACAACGACACCATCAGGAATAAACTTAGATC 192 32 100.0 34 ................................ TATCAAAAAACCGTTCTGCATTGCCAGTATGATC 126 32 100.0 34 ................................ CTATTGATGTGACTATCATTGGCAGATACCGATC 60 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 TTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : GTGGTATCCCCGTGTCTAGATAAACCTCACTCACCGGCTTAAAACCAAATGATTGATAGAACGTTTGCAGATAAGCCTGCGCCTGAATTTTCACAGTCGTCACCTGCGGCATATCTCTTTGAATAGTTTGTAGGCCACTCACAATTAATTGCCGACCGTATCCGTGTTTACGGAAACGCGGATCAACAACTACACGACCAATATGAACAATAGTTTTGTCCGTTTCCGGAATTATTCGTAAATAGCTCACTAATTGCTGATCTTCATTTAAAACTTGTAAATGTTGCGCAATCAAGTCTGCGTCGTCAACTTCTTGATACGCACATAATTGTTCGACTACAAAAACTTGGGTACGGAGTTTGTAGATTTGAAACAATTCTAGGTTGGATAGCTGGGAAAATTCTTTTACTGTGACTTCCATGTTTTAGGCTCCTTGATTATTTTTTATACTTTAGTGCAGTTCAATTCAAATGCTATCCATTTCCCATGTGGTCCGCTCA # Right flank : CTACTATATATATAGATAAGGAAAGGGAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 327-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBC01000146.1 Pediococcus inopinatus strain DSM 20285 Scaffold146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 326 36 100.0 30 .................................... TACTATATATATAGATAAGGAAAGGGAGTA 260 36 100.0 30 .................................... TGTTCCTGGGATGTTGGCGTTCGGTATCTG 194 36 100.0 30 .................................... GACTATATATATAGATAAGGAAAGGGAGTA 128 36 100.0 30 .................................... GGTTTAAGTGTTTTAGCACAACTCCAATTT 62 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GATCTTAACTATATTGATTCGACACTCTTCTAAAAC # Left flank : TTGATTCGACACTCTTCTAAAACCTATTGATGTGACTATCATTGGCAGATAC # Right flank : CGGTGTTAAGACTGATGAAATTGATAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTTAACTATATTGATTCGACACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 27680-31213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBC01000021.1 Pediococcus inopinatus strain DSM 20285 Scaffold21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27680 36 100.0 30 .................................... CCATGCAATCTAATGATAGCCGAATTGAAC 27746 36 100.0 30 .................................... GCCATAAGGTAAGTCTGCTAGAATCATGTC 27812 36 100.0 30 .................................... CGCTAAACATTGTTGTTCTAACAAGGTTAT 27878 36 100.0 30 .................................... AAACTGATAACGAGTTTTTTGCCTTTATGT 27944 36 100.0 30 .................................... GAACACGTGAGTTAATCTTGAATATTCGTA 28010 36 100.0 30 .................................... TCATGGACTTCGTCACTCGCATGTTTCATA 28076 36 100.0 30 .................................... GAGTAATATTTTAGATGTACAAGCAAGTGA 28142 36 100.0 30 .................................... TGATGCTGATTCCGTCAAGAACAGACACTA 28208 36 100.0 30 .................................... TGGTTACTCACGATAAAAACGGATTGGGAA 28274 36 100.0 30 .................................... CAATGATTGTGGCAAGCCATAAGCACCTGA 28340 36 100.0 30 .................................... AGTATTTTATAATTATATCTATATTTCACG 28406 36 100.0 30 .................................... CGTTCCATTAATTAGGTGCGCTCCAAAACT 28472 36 100.0 30 .................................... CAGACTGCTGACTTAATTGCTAGCAAAGTA 28538 36 100.0 30 .................................... CTTAATGCAATCGATGTAGAAAAGTTCCGG 28604 36 100.0 30 .................................... TGCCACATGTTAGTATTACTATCAAAAGGC 28670 36 100.0 30 .................................... GCAGACTCTTGGACTCTCACTCCAATCAGT 28736 36 100.0 30 .................................... GAGTTTACTTTAGTGAACGCAGAGCGAAGT 28802 36 100.0 30 .................................... ATCATAACGATCTGGTAAGAACGCAATCAC 28868 36 100.0 30 .................................... ACATGTCGGATCGATGTCATCTTTCAGTAG 28934 36 100.0 30 .................................... AGTTAGTAATAACTTTTCATCTTCATTTTT 29000 36 100.0 30 .................................... CTTACGCAGGAGAATTGGCTAAAGGCAATG 29066 36 100.0 30 .................................... TGCGGGGTGAGCTAGACGATCCACGCGGAT 29132 36 100.0 30 .................................... CAGAGAAAAGGTATATTGTACCTTTGCAAA 29198 36 100.0 30 .................................... GGTCTTTTTATATGGTCTAGTCTAAAGGGA 29264 36 100.0 30 .................................... CTCAGTAATAACTGGAATGGCTCGGTTAAG 29330 36 100.0 30 .................................... TCAGTACCAAAGTAAGGCTTATCTAAGTTC 29396 36 100.0 30 .................................... AAACGAATCGGAACACTGACGGTCGATGGG 29462 36 100.0 30 .................................... CCAACTATGGGTTTGACATGAACCGACAAA 29528 36 100.0 30 .................................... ATACATATCTTCAATCTTTTCCAAGTCTGT 29594 36 100.0 30 .................................... ACTTGTCTAACTTTGTCGCTATCCGTGTAT 29660 36 100.0 30 .................................... AACAATGGATGACCAGTCACCAGTAAACTT 29726 36 100.0 30 .................................... ATGTATGCGCGACCAGTGAAGCCAGTGAAA 29792 36 100.0 30 .................................... TTAACTGGGCTGTAGTAATACGTATTGAGC 29858 36 100.0 30 .................................... TGCACCAGCTATGGCTGAACAAGTGACTGA 29924 36 100.0 30 .................................... TTAGTTTCAACTTTATTATGCGTCCTTCCC 29990 36 100.0 30 .................................... TTCTTTTGTGAATTAGTTGACGCAGTATAT 30056 36 100.0 30 .................................... AATAGCGATAACTCAACCACCAGAATTGAG 30122 36 100.0 30 .................................... ACCGTCATTGTAGATGTAATTGATGATGTT 30188 36 100.0 30 .................................... CAATGATAGGAATGATTTACCTAGTGTTTT 30254 36 100.0 30 .................................... GCGTTGATTATTAACGATGATGAAATGACC 30320 36 100.0 30 .................................... AAAACATAACATTGTCAAAGCAACCTTTGC 30386 36 100.0 30 .................................... AGCTAGTTTGTACTTACTTGCCGAGGTTGA 30452 36 100.0 30 .................................... GCCAGAAGAAATTGATATTGATGATGACAG 30518 36 100.0 30 .................................... TTTTTAAACAATTTTTTGCGACAATCTGGC 30584 36 100.0 30 .................................... TTAATATATTCGTCAGCCTTATTCAAATCT 30650 36 100.0 30 .................................... CTCGTGGCTTTCTAGCTGGTCTAGGTCTAC 30716 36 100.0 30 .................................... GTGATTCCAATCGCATTAGTGGTTGGATTA 30782 36 100.0 30 .................................... TGGCAATTACGTATGCCTATACTAAAGATA 30848 36 100.0 30 .................................... GCAACCTGGTGGCATGTGACTAAAGCAGAT 30914 36 100.0 30 .................................... AACCAATGCATTCATAGCAGTTTGATTTTC 30980 36 100.0 30 .................................... CCATAACCCTAGCTTCAGATAGTAAAGCTT 31046 36 100.0 30 .................................... GTTTAATTGATTAGTTAAATCATTAACCTT 31112 36 100.0 30 .................................... GGCACTAAATAGCCCAATACTGTATAGACG 31178 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 54 36 100.0 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGATC # Left flank : AAGCTGACTTAAATAAAATGTTTCAAAGCCAGTTGCAAAAACAGATAGCCACAAAATTAGATGATGAGACCCGAATGAAATTGACTGAGATTAATAACCAATTGAAATCACTGATCTTTGATGCAACGTTTTCCTTGGATCTTCCGTTAAAAGTGGATAGTGAATTTGATCCAGCTAAGTTAGTTAAATACTGTGATGTTGGCTTTGTAAGTGCTTTAAATAGGGATCCATATGGTATAATAGAAACTGTATTAAAAACTGCTTCAGAATTAAAAGAGTCTAAAATATTAGTCTTAACTGGTGTACGAAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGGTTAATTAGTACCCTTGATTTGAACACTTTGTTTATTGAATTCTCAGAAATAGATAATCATGAAGAATTTGATGAATGCCGCTATTACTACGTTGATCAGGATTTTGTTGATTGGCGTTACTAATACTTATGAGAGTAGCATTGCAAAAAAACG # Right flank : GTAGCAGTGCTAAACCGCTTCTGTTCTGCCGTTTTAGAAGAGTGTCGAATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //