Array 1 413295-416926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEWE010000003.1 Burkholderia gladioli strain BCC1650, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 413295 28 100.0 33 ............................ CCTGGAAATCAGGGCTCTTGATCTGCGTCGGAA 413356 28 100.0 32 ............................ TTTTGCGGCATGTTCAATTTCCCCAAGACTTG 413416 28 100.0 32 ............................ AGAAAGAAGCGCCGAGAGGCCCCCGGGTATGA 413476 28 100.0 32 ............................ ATAGGGCGTCAATTCCCACGGCCCCGGCGTCC 413536 28 100.0 32 ............................ ATCGCCGCTCGCTTGACGACACGTGGCGTCAG 413596 28 100.0 32 ............................ ACTGCGCTCGGGCGAACATGGGCGAGTGTGGA 413656 28 100.0 32 ............................ TCGACCGCGCCGAAGCTCGCGAACAGGGCGCG 413716 28 100.0 32 ............................ TTCAATGGGGCGCTCGGGGAGCGAGTTGGCAC 413776 28 100.0 32 ............................ GGCTGCAAACCTCATCACGTTCACGCCGACGA 413836 28 100.0 32 ............................ ATAAGAAGCTGCTTAAAAATCGCCCTTGACTC 413896 28 100.0 32 ............................ GACCAAGCCCGACGAGAAAAAGGCGCGGTTCC 413956 28 100.0 32 ............................ ATGGCGAGCAGCCACTCGACGATCTTCGATTC 414016 28 100.0 32 ............................ AGTAGCGGGCGAGGGTCAGGCGGCGAAGTAAC 414076 28 100.0 32 ............................ AGCGAGCGGACACTAAACGATAAGTCGCGCGA 414136 28 100.0 32 ............................ CTTGTCCTTGGTCATCGCCAGCGCCTCGACCA 414196 28 100.0 32 ............................ TGGACGACGTAGAGGCCGATCGAGATCGCCGC 414256 28 100.0 32 ............................ TCCCCGCGAGCAGCCGGACTGCCGAGCGTGAT 414316 28 100.0 33 ............................ TTATCGGGGTCCAGTGCGTTGACTGCCTGACGC 414377 28 100.0 32 ............................ TGTCCCAGCGTCAGGCCAGCATTGGGGCCCAG 414437 28 100.0 32 ............................ TTCGAGCTGGCCCGGCTTCTCCGCGCGGGGCG 414497 28 100.0 32 ............................ GGGAGTTCGGGCGAGGTGTGGGCGCGCGGCGG 414557 28 100.0 32 ............................ TCGTCGCACTGGAAATCGATCAGGTACTCGAC 414617 28 100.0 32 ............................ GCGACCGATGCGCGGTCCAGCGCGCGGAGCAG 414677 28 100.0 32 ............................ CGTCAGCCCGGGCATTCCGGCTCCATGAAACT 414737 28 100.0 33 ............................ TAGCAAATTACGGAGGCTTCTGATGGCCAGCTC 414798 28 100.0 32 ............................ CTCATCTCTTTGCCCCAATGGGCCTTTCAGGA 414858 28 100.0 32 ............................ TTAAACGTCGCGCCGAGGAAGTCGCCGATATT 414918 28 100.0 32 ............................ GATCACGGCCAGCACGATCCAGAGGGAAAATA 414978 28 100.0 32 ............................ ACTCGAAAGCCAGATGGCTGCCGAGGAAGTCT 415038 28 100.0 32 ............................ GTGTCCGGATCAGTCCAGAACGCCGACACCTC 415098 28 100.0 32 ............................ TGCCAGTCATGCGCGAACGCCGAGCGCTTCGG 415158 28 100.0 32 ............................ CGAGCGCGGGGCCGTCCAGCAGGGGAAACAGG 415218 28 100.0 32 ............................ ATGCCGGACAGGTGCTCCCACTTCGCGCACTC 415278 28 96.4 32 .........................G.. TCATGTCAGACCTGAAGCTCGAGTATGCCGTC 415338 28 100.0 32 ............................ TCATTGAGTAGCAGGCAGACCCGGTGGTCAGA 415398 28 100.0 32 ............................ GATCGAATTCGGTGAGCTTCCGCCGGACGGCA 415458 28 100.0 32 ............................ GCTTGGGGCGGTAGGTCTGCCAGGGGCGGTGA 415518 28 100.0 32 ............................ TGGTCATGCAGGAAGTGCGCAACGAGAACGAT 415578 28 96.4 32 .................T.......... ACGACGACGAGCCGAAATCGTCCATCCACACC 415638 28 96.4 32 ..................T......... TACTTGGACGGCCGGCAACCGCTTTTCTCGCA 415698 28 100.0 32 ............................ GCAGACTCGTGGCGGGATCTGGGGCGTCTACC 415758 28 100.0 32 ............................ TCCCGTATCAGCAGCGAGTGGGCCGCAAGCAC 415818 28 100.0 32 ............................ TGCGCCACGTTCTCGGCTTCCCGAATTTCCGC 415878 28 100.0 32 ............................ GCTCGTGAACATGTCGTCTGCGTGGTATTCGA 415938 28 100.0 32 ............................ ATGCGCTCGGCAACAACGCCGGTCGTGCCAGC 415998 28 100.0 32 ............................ AAGCGCGGCACGCTGATCGTCGGAAATGCGGC 416058 28 100.0 32 ............................ AACGGAAGCTGCTCGGTGATTTTGAGGGTGAT 416118 28 100.0 32 ............................ GGGCAGAACCGACATGCACAGCCTGACGACCG 416178 28 100.0 32 ............................ ATCAGGTGCTCGACCTGGCGCGCGCACCAGAC 416238 28 100.0 32 ............................ AATCCAGAGAGAATTTCGATGCTCGGCGCGAC 416298 28 100.0 32 ............................ CAGGGAAGTGCACCCGAAAGTGCACCCAGGAA 416358 28 100.0 32 ............................ TTGTGCACCAACTATGTTGCAACCAGCGAAAG 416418 28 100.0 32 ............................ TGCTGATGCGGGAGAGGCGGTGGGGATCGTGG 416478 28 100.0 32 ............................ TGCGATTGCGAGGCGATCGGAGGCGCGTAGAC 416538 28 100.0 32 ............................ CTTGTAGTTGACGCCGCGAAAGCTCGCGCCGT 416598 28 96.4 32 .......................G.... TCATCAATCGCGGCGCGCATCGCCTCGACTTC 416658 28 96.4 32 ..............G............. ACCAGTCGCGGCCCACAGAAACCAAAATCGCA 416718 28 100.0 32 ............................ AACTGGCCCGAGCATCTTCATGAACCCAGGCC 416778 28 96.4 32 .........T.................. ATACCGCGCGCTCGCTGACCAGGCCGCCACGC 416838 28 100.0 32 ............................ AGTCGATGCAGTCGGCGGCCGTGCGCCACGGC 416898 28 92.9 0 ...........T.C.............. | T [416922] ========== ====== ====== ====== ============================ ================================= ================== 61 28 99.5 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : ATGGTTTGCATTCGCTGATGGCGCAGTCCTGGCTGCAGGGGATGCGGGATCACGTGGCGATCGCGACGCTGGCGCCCGTGCCGGACGGCGCGATGCATCTGGTCGTGCGACGACGGCAGTTCAAGACCAACGCGGACCGTCTGCGGCGACGACGGATGCAGCGCAAAGGGGAAACGGCCGAGCAGGCTGCCGCGCATATTCCCGATTCCGTCGAGCGTCGGCCTGATCTTCCGTATGTGCGTCTACGCAGCGCGAGCACGGGACAGGTGTTTTGCCTATTTGTCGAGCAGGGGGGCGCGGTGAGCGAGCAGGTGCCTGGGGCGTTCAATGTCTATGGGCTGAGCCAGGGGGCGACGGTGCCCTGGTTTTAACCCTTTTCTTGGGCTGATTTGGTTGGCCTTTGAAATCAATGGGTTAGCGAAAGGGCGGAAATTTGGGTGGTTTGCCCTTTCGCGCGTGTTTGTTGTTTGGAAACAAGGGGTTGGAGGGGGAAGGGGCTA # Right flank : ACTGCGATATGAAAGTCCGGCAGACGGGCAAGTTTTGCCTCCGGCGCGCGTGTTTTAAAATCGTAGCGCCAACGGCATCGTCACCGAAGTCGTTGATATGACGAGGCATCCTCGCAGACTGGCTCGAATACCGAGTCGTCCGCGATTCGCGCATGTTCGCACTCGATCGCGGCACAGGCAGCGCCACAAACCAGACACAAGACAGGACAACAGGCCGATGACATTCAATCGCAAGATGGCGCAGTGGACGGCAGCCGCATTGGCCATCACCTGCCTGCAGGTGACCAACGCGAACGCACAGACCTTGAACATACCGCTCGGCACACCCGACGGATTCTCCGCATCATCGATCAAGAACGTGGGCCAGGACCGCTATTGCATCAGCGGCCGCGTGTACGACGACGCGGGGCCGAGCAACACGGCGATGGCCGTGCTGGTGGACGCCCGGCATCGTACCGTGTCGTGGAAGACCTCGATTCCGCATCCGCGCGACTACGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //